Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q7260_RS03390 Genome accession   NZ_CP131440
Coordinates   639895..640668 (+) Length   257 a.a.
NCBI ID   WP_057033555.1    Uniprot ID   A0A5T2BM52
Organism   Campylobacter jejuni strain S36     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 634895..645668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS03375 (Q7260_03375) - 635744..637678 (-) 1935 WP_305101553.1 ribonuclease R family protein -
  Q7260_RS03380 (Q7260_03380) ilvC 637797..638819 (+) 1023 WP_057033551.1 ketol-acid reductoisomerase -
  Q7260_RS03385 (Q7260_03385) - 638823..639905 (+) 1083 WP_057033553.1 divergent polysaccharide deacetylase family protein -
  Q7260_RS03390 (Q7260_03390) dprA 639895..640668 (+) 774 WP_057033555.1 DNA-processing protein DprA Machinery gene
  Q7260_RS03395 (Q7260_03395) ruvX 640665..641048 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  Q7260_RS03400 (Q7260_03400) - 641077..641916 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  Q7260_RS03405 (Q7260_03405) msrA 642090..642587 (-) 498 WP_057033556.1 peptide-methionine (S)-S-oxide reductase MsrA -
  Q7260_RS03410 (Q7260_03410) ppa 642629..643147 (-) 519 WP_002867724.1 inorganic diphosphatase -
  Q7260_RS03415 (Q7260_03415) adk 643157..643735 (-) 579 WP_002859580.1 adenylate kinase -
  Q7260_RS03420 (Q7260_03420) aspS 643732..645483 (-) 1752 WP_058000807.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28760.61 Da        Isoelectric Point: 7.6510

>NTDB_id=862394 Q7260_RS03390 WP_057033555.1 639895..640668(+) (dprA) [Campylobacter jejuni strain S36]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVVALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=862394 Q7260_RS03390 WP_057033555.1 639895..640668(+) (dprA) [Campylobacter jejuni strain S36]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTGTTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.611

100

0.996
  dprA Helicobacter pylori 26695

48.333

93.385

0.451