Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q6386_RS07885 Genome accession   NZ_CP130891
Coordinates   1500806..1501417 (-) Length   203 a.a.
NCBI ID   WP_050169631.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1495806..1506417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS07855 (Q6386_07855) dut 1497061..1497513 (-) 453 WP_103195211.1 dUTP diphosphatase -
  Q6386_RS07860 (Q6386_07860) - 1497679..1498386 (+) 708 Protein_1506 AzlC family ABC transporter permease -
  Q6386_RS07865 (Q6386_07865) - 1498383..1498691 (+) 309 WP_010951048.1 AzlD family protein -
  Q6386_RS07870 (Q6386_07870) pilL 1498761..1499237 (-) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6386_RS07875 (Q6386_07875) pilK 1499239..1499850 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6386_RS07880 (Q6386_07880) pilJ 1499829..1500809 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  Q6386_RS07885 (Q6386_07885) pilV 1500806..1501417 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6386_RS07890 (Q6386_07890) pilH 1501449..1502114 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6386_RS07895 (Q6386_07895) dnaB 1502269..1503675 (-) 1407 WP_047917169.1 replicative DNA helicase -
  Q6386_RS07900 (Q6386_07900) - 1503839..1504420 (+) 582 WP_047923823.1 superoxide dismutase -
  Q6386_RS07905 (Q6386_07905) - 1504652..1505161 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6386_RS07910 (Q6386_07910) - 1505492..1505824 (-) 333 WP_003687908.1 hypothetical protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22076.13 Da        Isoelectric Point: 4.8546

>NTDB_id=861699 Q6386_RS07885 WP_050169631.1 1500806..1501417(-) (pilV) [Neisseria gonorrhoeae strain NJ208430]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=861699 Q6386_RS07885 WP_050169631.1 1500806..1501417(-) (pilV) [Neisseria gonorrhoeae strain NJ208430]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilI Neisseria gonorrhoeae MS11

83.744

100

0.837
  pilV Neisseria gonorrhoeae MS11

83.744

100

0.837