Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   Q6357_RS03265 Genome accession   NZ_CP130888
Coordinates   701244..701672 (+) Length   142 a.a.
NCBI ID   WP_056702998.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 696244..706672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS03255 (Q6357_03255) - 696831..698816 (-) 1986 WP_251185508.1 hydantoinase B/oxoprolinase family protein -
  Q6357_RS03260 (Q6357_03260) - 698806..700875 (-) 2070 WP_041508230.1 hydantoinase/oxoprolinase family protein -
  Q6357_RS03265 (Q6357_03265) nucA/comI 701244..701672 (+) 429 WP_056702998.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  Q6357_RS03270 (Q6357_03270) - 701799..703496 (+) 1698 WP_056703001.1 methyl-accepting chemotaxis protein -
  Q6357_RS03275 (Q6357_03275) comJ 703634..704020 (+) 387 WP_039166300.1 competence protein ComJ -
  Q6357_RS03280 (Q6357_03280) - 704022..704828 (-) 807 WP_304717488.1 aminoglycoside N(3)-acetyltransferase -
  Q6357_RS03285 (Q6357_03285) - 704853..705272 (-) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  Q6357_RS03290 (Q6357_03290) - 705388..706152 (+) 765 WP_304717489.1 MBL fold metallo-hydrolase -
  Q6357_RS03295 (Q6357_03295) - 706199..706528 (-) 330 WP_024718960.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15961.90 Da        Isoelectric Point: 5.9940

>NTDB_id=861520 Q6357_RS03265 WP_056702998.1 701244..701672(+) (nucA/comI) [Bacillus altitudinis strain 28M1-1]
MKLLKTILLLLLIVIGVATGYVQLEQNKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=861520 Q6357_RS03265 WP_056702998.1 701244..701672(+) (nucA/comI) [Bacillus altitudinis strain 28M1-1]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATGTCCAACTAGAGCAAAA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAACACA
TAGAAGAAGCTATTGACGAAGGACATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.345

83.803

0.514