Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   WBM82_RS12310 Genome accession   NZ_CP147494
Coordinates   2320457..2321947 (-) Length   496 a.a.
NCBI ID   WP_160221661.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315457..2326947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS12280 (WBM82_12325) gudB 2315601..2316875 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  WBM82_RS12285 (WBM82_12330) mecB 2317031..2317615 (-) 585 WP_003230533.1 genetic competence negative regulator -
  WBM82_RS12290 (WBM82_12335) ypbG 2317774..2318553 (-) 780 WP_003230532.1 metallophosphoesterase -
  WBM82_RS12295 (WBM82_12340) ypbF 2318640..2319083 (-) 444 WP_003230531.1 YpbF family protein -
  WBM82_RS12300 (WBM82_12345) ypbE 2319146..2319877 (-) 732 WP_160221660.1 LysM peptidoglycan-binding domain-containing protein -
  WBM82_RS12305 (WBM82_12350) ypbD 2319828..2320430 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  WBM82_RS12310 (WBM82_12355) recS 2320457..2321947 (-) 1491 WP_160221661.1 ATP-dependent DNA helicase RecQ Machinery gene
  WBM82_RS12315 (WBM82_12360) gmmB 2321940..2322998 (-) 1059 WP_217024492.1 helix-turn-helix domain-containing protein -
  WBM82_RS12320 (WBM82_12365) fer 2323264..2323512 (+) 249 WP_003225461.1 ferredoxin -
  WBM82_RS12325 (WBM82_12370) fmnP 2323552..2324124 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  WBM82_RS12330 (WBM82_12375) serA 2324621..2326198 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56535.08 Da        Isoelectric Point: 6.3928

>NTDB_id=859533 WBM82_RS12310 WP_160221661.1 2320457..2321947(-) (recS) [Bacillus subtilis strain YT1]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELYRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=859533 WBM82_RS12310 WP_160221661.1 2320457..2321947(-) (recS) [Bacillus subtilis strain YT1]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGTACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996