Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   WBM82_RS09570 Genome accession   NZ_CP147494
Coordinates   1754943..1755374 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain YT1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749943..1760374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS09550 (WBM82_09580) spoVS 1750504..1750764 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  WBM82_RS09555 (WBM82_09585) tdh 1751030..1752073 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  WBM82_RS09560 (WBM82_09590) kbl 1752086..1753264 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  WBM82_RS09565 (WBM82_09595) miaB 1753412..1754941 (+) 1530 WP_160221593.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  WBM82_RS09570 (WBM82_09600) ymcA 1754943..1755374 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  WBM82_RS09575 (WBM82_09605) cotE 1755628..1756173 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  WBM82_RS09580 (WBM82_09610) hexA 1756306..1758882 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=859523 WBM82_RS09570 WP_003231834.1 1754943..1755374(+) (ymcA) [Bacillus subtilis strain YT1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=859523 WBM82_RS09570 WP_003231834.1 1754943..1755374(+) (ymcA) [Bacillus subtilis strain YT1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1