Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   WBM82_RS04755 Genome accession   NZ_CP147494
Coordinates   841515..842231 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain YT1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 836515..847231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS04740 (WBM82_04760) yfkQ 836593..838134 (-) 1542 WP_069703764.1 spore germination protein -
  WBM82_RS04745 (WBM82_04765) treP 838323..839735 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  WBM82_RS04750 (WBM82_04770) treC 839806..841494 (+) 1689 WP_029726871.1 alpha,alpha-phosphotrehalase -
  WBM82_RS04755 (WBM82_04775) treR 841515..842231 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  WBM82_RS04760 (WBM82_04780) hypO 842371..843036 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=859477 WBM82_RS04755 WP_003233679.1 841515..842231(+) (treR) [Bacillus subtilis strain YT1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=859477 WBM82_RS04755 WP_003233679.1 841515..842231(+) (treR) [Bacillus subtilis strain YT1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGTAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTAGATGACGACATCTGGGAAGTCATCAGGTCTCGGAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416