Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K6J80_RS11815 Genome accession   NZ_AP024553
Coordinates   2620261..2620779 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain IDH-03329     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2615261..2625779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS11790 rimM 2615370..2615924 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  K6J80_RS11795 rpsP 2615952..2616200 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  K6J80_RS11800 ffh 2616436..2617821 (-) 1386 WP_000462720.1 signal recognition particle protein -
  K6J80_RS11805 - 2618034..2618828 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  K6J80_RS11810 - 2618911..2620191 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  K6J80_RS11815 luxS 2620261..2620779 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  K6J80_RS11820 gshA 2620828..2622402 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  K6J80_RS11825 - 2622514..2625369 (-) 2856 WP_001233047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=85896 K6J80_RS11815 WP_001130227.1 2620261..2620779(-) (luxS) [Vibrio cholerae strain IDH-03329]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=85896 K6J80_RS11815 WP_001130227.1 2620261..2620779(-) (luxS) [Vibrio cholerae strain IDH-03329]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment