Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q2B68_RS09215 Genome accession   NZ_CP130280
Coordinates   1800222..1801121 (+) Length   299 a.a.
NCBI ID   WP_015388238.1    Uniprot ID   A0A6A8LH26
Organism   Bacillus amyloliquefaciens strain PM415     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1795222..1806121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS09195 (Q2B68_09195) - 1795913..1797616 (+) 1704 WP_302565209.1 glycosyl transferase -
  Q2B68_RS09200 (Q2B68_09200) - 1797613..1797894 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  Q2B68_RS09205 (Q2B68_09205) sucC 1798069..1799226 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  Q2B68_RS09210 (Q2B68_09210) sucD 1799255..1800157 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  Q2B68_RS09215 (Q2B68_09215) dprA 1800222..1801121 (+) 900 WP_015388238.1 DNA-processing protein DprA Machinery gene
  Q2B68_RS09220 (Q2B68_09220) topA 1801303..1803378 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  Q2B68_RS09225 (Q2B68_09225) trmFO 1803443..1804750 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q2B68_RS09230 (Q2B68_09230) xerC 1804820..1805737 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32820.92 Da        Isoelectric Point: 7.8285

>NTDB_id=857546 Q2B68_RS09215 WP_015388238.1 1800222..1801121(+) (dprA) [Bacillus amyloliquefaciens strain PM415]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=857546 Q2B68_RS09215 WP_015388238.1 1800222..1801121(+) (dprA) [Bacillus amyloliquefaciens strain PM415]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGAAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365