Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6M96_RS06075 Genome accession   NZ_CP146250
Coordinates   1252658..1253395 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain L26     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247658..1258395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M96_RS06045 (V6M96_06045) yfiL 1247816..1248181 (-) 366 WP_024248389.1 DUF2799 domain-containing protein -
  V6M96_RS06050 (V6M96_06050) aroF 1248391..1249461 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V6M96_RS06055 (V6M96_06055) tyrA 1249472..1250593 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V6M96_RS06060 (V6M96_06060) pheA 1250636..1251796 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  V6M96_RS06065 (V6M96_06065) pheL 1251895..1251942 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V6M96_RS06070 (V6M96_06070) raiA 1252046..1252387 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V6M96_RS06075 (V6M96_06075) comL 1252658..1253395 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V6M96_RS06080 (V6M96_06080) rluD 1253530..1254510 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6M96_RS06085 (V6M96_06085) yfiH 1254507..1255238 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  V6M96_RS06090 (V6M96_06090) clpC 1255368..1257941 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=855053 V6M96_RS06075 WP_000197686.1 1252658..1253395(-) (comL) [Escherichia coli strain L26]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=855053 V6M96_RS06075 WP_000197686.1 1252658..1253395(-) (comL) [Escherichia coli strain L26]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376