Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QN216_RS01310 Genome accession   NZ_CP129682
Coordinates   336277..338046 (+) Length   589 a.a.
NCBI ID   WP_369341134.1    Uniprot ID   -
Organism   Bifidobacterium fermentum strain WK013_4_14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 331277..343046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN216_RS01295 (QN216_01285) ilvC 332140..333195 (+) 1056 WP_369341131.1 ketol-acid reductoisomerase -
  QN216_RS01300 (QN216_01290) - 333609..335195 (-) 1587 WP_369341132.1 amino acid permease -
  QN216_RS01305 (QN216_01295) - 335588..336109 (+) 522 WP_369341133.1 MarR family winged helix-turn-helix transcriptional regulator -
  QN216_RS01310 (QN216_01300) rcrP 336277..338046 (+) 1770 WP_369341134.1 ABC transporter ATP-binding protein Regulator
  QN216_RS01315 (QN216_01305) rcrQ 338097..339947 (+) 1851 WP_394854715.1 ABC transporter ATP-binding protein Regulator
  QN216_RS01320 (QN216_01310) - 340188..341042 (-) 855 WP_369341135.1 SDR family oxidoreductase -
  QN216_RS01325 (QN216_01315) - 341380..341691 (-) 312 WP_369341136.1 HigA family addiction module antitoxin -
  QN216_RS01330 (QN216_01320) - 341666..341863 (-) 198 WP_369341137.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64561.62 Da        Isoelectric Point: 5.0818

>NTDB_id=854870 QN216_RS01310 WP_369341134.1 336277..338046(+) (rcrP) [Bifidobacterium fermentum strain WK013_4_14]
MIRICKYLSKLEIGELILGVALVISQVWFDLKLPDYMSDVTRIVETPNSKVSEVWTAGGKMLLISLGSIACAIATGFIAA
RVAATFTQRLRSLEFKQVESFSTQELGNFSTASLITRSTNDITQIQMFITMGLLLIVRAPVMAVWAVLKIAGKGFEWTVA
TGVAVAFLVVAIVILMSMVGPKFRSMQRLTDNINLVARENLTGLRVVRAYNAEDYQEEKFDHANDDLTSTQLFTNRAIAV
LMPLMNTVLNGLMLAVYWIGAYLIEQATLGDKLTLFSNMVVFSSYSVQVIMGFLLMSMVFVLLPRANVSANRILEVLDTP
ISITDGTRDGGEQDLEGTVEFRNMGFKYPDAKHNVLDDISFKVDKGQTIAFIGATGSGKSTLINLVPRFYDASSGQVLVD
GVNVKDYKLSALRDKIGYVPQESFLFRGTVESNIAYGAKADAVSDETREEGVKAAASIAHATEFVEKMPEGFDSPIAQSG
SNVSGGQKQRLSIARAVWSKPEILIFDDSFSALDFKTDREVRDALARETAGSTVMIVAQRIGTIMNADKIVVLDQGRIVG
MGTHKELLDSCEIYRQIAESQLSAKELVD

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=854870 QN216_RS01310 WP_369341134.1 336277..338046(+) (rcrP) [Bifidobacterium fermentum strain WK013_4_14]
GTGATTCGTATATGTAAATATCTTTCAAAGCTTGAGATCGGGGAACTCATCCTTGGGGTTGCCCTCGTGATCTCACAGGT
CTGGTTCGACCTGAAACTGCCCGACTATATGTCCGACGTTACGCGAATCGTCGAGACGCCGAATTCAAAGGTTTCGGAAG
TCTGGACGGCGGGCGGCAAGATGCTGCTCATCTCGCTAGGCTCCATTGCGTGCGCCATCGCGACGGGCTTCATCGCAGCC
CGGGTTGCCGCAACGTTCACCCAGCGCCTGCGTTCGCTCGAGTTCAAGCAAGTGGAATCATTCTCAACCCAGGAGTTGGG
CAATTTCTCGACGGCAAGCCTGATCACTCGCTCGACCAACGACATCACGCAGATTCAGATGTTCATCACGATGGGATTGC
TGCTGATCGTGCGCGCGCCTGTCATGGCCGTATGGGCAGTCCTGAAGATCGCTGGAAAAGGTTTCGAGTGGACCGTCGCA
ACGGGCGTTGCGGTCGCATTCCTGGTCGTTGCCATCGTCATCCTGATGAGCATGGTCGGACCGAAGTTCCGTAGCATGCA
GCGGCTTACCGATAACATCAACCTCGTCGCACGCGAGAATCTGACCGGTCTCAGAGTCGTCCGTGCATACAATGCGGAGG
ACTATCAGGAAGAGAAGTTCGATCATGCGAACGACGATCTGACCTCGACCCAGCTCTTCACCAACCGTGCCATAGCCGTG
CTGATGCCGTTGATGAACACGGTGCTCAACGGTCTGATGCTCGCCGTCTATTGGATTGGCGCCTATCTCATCGAGCAGGC
GACTCTGGGCGACAAGCTCACCCTCTTCTCGAACATGGTCGTGTTCTCGAGCTATTCGGTGCAGGTGATCATGGGCTTCC
TGCTGATGAGCATGGTGTTCGTGCTGCTGCCTCGTGCGAACGTCTCGGCAAACCGCATTCTCGAAGTGCTCGATACCCCG
ATTTCCATAACCGACGGCACCAGGGATGGTGGCGAACAAGACCTGGAAGGTACGGTGGAATTCCGCAATATGGGCTTCAA
ATACCCCGACGCCAAGCACAACGTCCTCGATGACATCAGCTTCAAGGTGGACAAGGGCCAGACCATAGCGTTCATCGGAG
CGACCGGCTCGGGAAAGTCGACGCTCATCAACCTCGTCCCGCGATTCTATGATGCCTCATCCGGTCAGGTGCTCGTCGAT
GGCGTTAACGTGAAGGATTACAAGCTCAGCGCACTTCGCGACAAGATCGGTTACGTGCCTCAGGAATCATTCCTCTTCCG
AGGAACCGTCGAGTCGAATATCGCCTATGGTGCAAAGGCGGATGCAGTCTCGGACGAAACGAGGGAAGAGGGCGTCAAGG
CTGCGGCTTCGATAGCGCATGCAACCGAATTCGTTGAAAAGATGCCAGAAGGATTCGACTCTCCGATCGCACAGTCCGGA
TCGAACGTGTCAGGCGGCCAGAAGCAGCGGCTCTCGATTGCCCGAGCGGTATGGAGCAAGCCGGAGATACTGATCTTCGA
TGATTCGTTCTCGGCGCTCGACTTCAAGACTGACCGAGAGGTTCGCGACGCGCTCGCGCGGGAAACGGCCGGCAGCACGG
TCATGATCGTCGCGCAGCGCATAGGAACCATAATGAATGCCGACAAAATCGTCGTGCTTGACCAGGGACGCATCGTTGGC
ATGGGAACGCATAAGGAATTGCTGGATTCTTGCGAGATATACAGGCAGATAGCCGAAAGCCAGCTCAGTGCAAAGGAATT
GGTGGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-509)

ABC transporter transmembrane region (ABC_membrane)

(60-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.748

100

0.496