Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U69_RS05025 Genome accession   NZ_CP145867
Coordinates   1106516..1107586 (-) Length   356 a.a.
NCBI ID   WP_410533273.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101516..1112586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS05010 (V6U69_05010) pstB 1102238..1102996 (+) 759 WP_410533269.1 phosphate ABC transporter ATP-binding protein PstB -
  V6U69_RS05015 (V6U69_05015) phoU 1103025..1103678 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  V6U69_RS05020 (V6U69_05020) - 1103812..1106352 (+) 2541 WP_410533271.1 M1 family metallopeptidase -
  V6U69_RS05025 (V6U69_05025) xerS 1106516..1107586 (-) 1071 WP_410533273.1 tyrosine recombinase XerS Machinery gene
  V6U69_RS05030 (V6U69_05030) - 1107692..1108796 (+) 1105 Protein_974 ISL3 family transposase -
  V6U69_RS05035 (V6U69_05035) - 1108869..1109432 (-) 564 WP_410533275.1 hypothetical protein -
  V6U69_RS05040 (V6U69_05040) - 1109425..1110657 (-) 1233 WP_410533277.1 AAA family ATPase -
  V6U69_RS05045 (V6U69_05045) - 1110975..1111964 (-) 990 WP_201710879.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41425.48 Da        Isoelectric Point: 9.2653

>NTDB_id=853963 V6U69_RS05025 WP_410533273.1 1106516..1107586(-) (xerS) [Streptococcus salivarius strain KSS10]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853963 V6U69_RS05025 WP_410533273.1 1106516..1107586(-) (xerS) [Streptococcus salivarius strain KSS10]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTAGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTTACAACCCTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATTTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACTATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCTCGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAGACCATGGAATTTCTTGATTATGTTGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGCGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAGAATTATCTTAGTATACGTGATAAACGCTATAAGGCAGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGTGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTGAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACATACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.989

100

0.84