Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V6U68_RS03880 Genome accession   NZ_CP145866
Coordinates   765458..766114 (-) Length   218 a.a.
NCBI ID   WP_064524719.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 760458..771114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS03860 (V6U68_03855) holA 760635..761669 (+) 1035 WP_410531958.1 DNA polymerase III subunit delta -
  V6U68_RS03865 (V6U68_03860) sodA 761765..762370 (+) 606 WP_049545964.1 superoxide dismutase SodA -
  V6U68_RS03870 (V6U68_03865) - 762385..763845 (-) 1461 WP_410531959.1 IS1182 family transposase -
  V6U68_RS03875 (V6U68_03870) - 764037..765428 (+) 1392 WP_175062835.1 serine hydrolase -
  V6U68_RS03880 (V6U68_03875) cclA/cilC 765458..766114 (-) 657 WP_064524719.1 prepilin peptidase Machinery gene
  V6U68_RS03885 (V6U68_03880) - 766224..766745 (+) 522 WP_002890656.1 Dps family protein -
  V6U68_RS03890 (V6U68_03885) - 766834..767271 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  V6U68_RS03895 (V6U68_03890) - 767379..767585 (+) 207 WP_002890657.1 YqgQ family protein -
  V6U68_RS03900 (V6U68_03895) - 767578..768546 (+) 969 WP_410531960.1 ROK family glucokinase -
  V6U68_RS03905 (V6U68_03900) typA 768691..770541 (+) 1851 WP_002884130.1 translational GTPase TypA -
  V6U68_RS03910 (V6U68_03905) - 770561..770830 (+) 270 WP_002884134.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25171.35 Da        Isoelectric Point: 7.9637

>NTDB_id=853837 V6U68_RS03880 WP_064524719.1 765458..766114(-) (cclA/cilC) [Streptococcus salivarius strain KSS9]
MLSIIYFFLGASLGSFIGLVCDRFPENSIIFPSSHCSYCKHQLRFSEMIPILSQLFLRSRCRSCQSPIPFRYLFMEIFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKQKSYPLLIWIVGTVPLLFMGNYYLTFAIGIILAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=853837 V6U68_RS03880 WP_064524719.1 765458..766114(-) (cclA/cilC) [Streptococcus salivarius strain KSS9]
ATGTTAAGCATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCGATTATTTTTCCTAGTAGTCACTGTAGCTATTGCAAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGTCTCCTATCCCTTTTCGTTACCTCTTTATGGAAATATTTTGTGGG
GTAATATGTCTTCTATATTTCTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGATTTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATAATCCTCGCTTTCCTTTCTTTTATAAAACATCTAAACATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCGTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTCCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

98.165

0.39
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.785

98.165

0.381