Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6U67_RS00325 Genome accession   NZ_CP145865
Coordinates   53793..54383 (+) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48793..59383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS00300 (V6U67_00300) - 49917..50372 (-) 456 WP_014633774.1 DUF3021 domain-containing protein -
  V6U67_RS00305 (V6U67_00305) brsR 50369..50806 (-) 438 WP_014633775.1 LytTR family DNA-binding domain-containing protein Regulator
  V6U67_RS00310 (V6U67_00310) - 50985..51290 (+) 306 WP_002886319.1 hypothetical protein -
  V6U67_RS00315 (V6U67_00315) hexB 51340..53283 (+) 1944 WP_022495805.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6U67_RS00320 (V6U67_00320) - 53414..53635 (+) 222 WP_022495804.1 hypothetical protein -
  V6U67_RS00325 (V6U67_00325) ruvA 53793..54383 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  V6U67_RS00330 (V6U67_00330) - 54392..54946 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  V6U67_RS00335 (V6U67_00335) cinA 55043..56311 (+) 1269 WP_014633777.1 competence/damage-inducible protein A Machinery gene
  V6U67_RS00340 (V6U67_00340) recA 56347..57486 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U67_RS00345 (V6U67_00345) spx 57654..58052 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=853682 V6U67_RS00325 WP_002886323.1 53793..54383(+) (ruvA) [Streptococcus salivarius strain KSS8]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=853682 V6U67_RS00325 WP_002886323.1 53793..54383(+) (ruvA) [Streptococcus salivarius strain KSS8]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ACGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423