Detailed information NTG0853111

Bioinformatically predicted

Overview

• Name: recR
• Type: Machinery gene
• Locus tag: QYS50_RS02060
• Genome accession: NZ_CP129415
• Coordinates: 424375..425031 (+)
• Length: 218 a.a.
• NCBI ID: WP_407571319.1
• Uniprot ID: -
• Organism: Deinococcus altitudinis strain LMG 24022
• Function: promote later steps in plasmid transformation (predicted from homology) Homologous recombination

Genomic Context

Location: 419375..430031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYS50_RS02025 (QYS50_02025)	-	419523..420350 (-)	828	WP_407571318.1	phytoene/squalene synthase family protein	-
QYS50_RS02030 (QYS50_02030)	-	420714..421460 (-)	747	WP_407570331.1	class I SAM-dependent methyltransferase	-
QYS50_RS02035 (QYS50_02035)	-	421694..422416 (+)	723	WP_407570332.1	phage holin family protein	-
QYS50_RS02040 (QYS50_02040)	-	422416..422877 (+)	462	WP_407570333.1	hypothetical protein	-
QYS50_RS02045 (QYS50_02045)	-	423102..423707 (+)	606	WP_407570334.1	peroxidase-related enzyme	-
QYS50_RS02050 (QYS50_02050)	-	423704..423937 (+)	234	WP_407570335.1	hypothetical protein	-
QYS50_RS02055 (QYS50_02055)	-	424082..424378 (+)	297	WP_407570336.1	YbaB/EbfC family nucleoid-associated protein	-
QYS50_RS02060 (QYS50_02060)	recR	424375..425031 (+)	657	WP_407571319.1	recombination mediator RecR	Machinery gene
QYS50_RS02065 (QYS50_02065)	-	425168..425518 (+)	351	WP_407570337.1	roadblock/LC7 domain-containing protein	-
QYS50_RS02070 (QYS50_02070)	-	425580..425939 (+)	360	WP_407570338.1	roadblock/LC7 domain-containing protein	-
QYS50_RS02075 (QYS50_02075)	-	425939..426253 (+)	315	WP_407570339.1	roadblock/LC7 domain-containing protein	-
QYS50_RS02080 (QYS50_02080)	-	426353..426940 (+)	588	WP_407570340.1	lysophospholipid acyltransferase family protein	-
QYS50_RS02085 (QYS50_02085)	rpmE	427117..427347 (+)	231	WP_407541506.1	50S ribosomal protein L31	-
QYS50_RS02090 (QYS50_02090)	-	427611..428222 (+)	612	WP_407570341.1	thymidine kinase	-
QYS50_RS02095 (QYS50_02095)	-	428331..428723 (+)	393	WP_407570342.1	hypothetical protein	-
QYS50_RS02100 (QYS50_02100)	-	428923..429981 (+)	1059	WP_407570343.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 218 a.a.
• Molecular weight: 23541.94 Da
• Isoelectric Point: 5.1060

>NTDB_id=853111 QYS50_RS02060 WP_407571319.1 424375..425031(+) (recR) [Deinococcus altitudinis strain LMG 24022]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSGALLDAKRDLHTCPVCFNITDAERCDVCSDPSRDQA
MICVVEEPGDVIAIERSGEYQGLYHVLHGVISPMNGVGPDKLYIKALLPRLNTAQEVILATGTTVEGEATALYLQRLLEP
LGVGLSRIAYGLPVGGALEYADEVTLGRALSGRQHLNSPQPVASRPETPPGPGAAEDR

Nucleotide

• Length: 657 bp

>NTDB_id=853111 QYS50_RS02060 WP_407571319.1 424375..425031(+) (recR) [Deinococcus altitudinis strain LMG 24022]
CTGAAGTACCCCCCAAGTCTGGTGGCCCTGATCCGGGAATTGTCGCGGCTGCCGGGCATCGGACCGAAGAGTGCCCAGCG
GCTGGCCTTCCACCTGTTCGAGCAGCCGCGTGAAGACATCGAGCGGCTGTCCGGTGCCCTGCTGGACGCCAAACGCGACC
TGCACACCTGCCCGGTGTGTTTCAACATCACCGACGCCGAACGCTGCGACGTGTGCAGCGACCCCAGCCGCGACCAGGCG
ATGATCTGTGTGGTCGAGGAACCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCAGGGGCTGTACCACGTGCT
GCACGGCGTGATTTCGCCCATGAACGGCGTCGGGCCGGACAAGCTGTACATCAAGGCGCTGCTGCCGCGCCTGAACACCG
CGCAGGAAGTCATTCTGGCGACCGGCACCACTGTCGAGGGCGAGGCCACCGCGCTCTACCTTCAGCGCCTGCTGGAACCG
TTGGGCGTGGGGCTGTCGCGCATCGCCTACGGGCTGCCGGTGGGAGGCGCGCTGGAATACGCCGACGAGGTGACGCTGGG
CCGAGCCCTGTCGGGGCGTCAGCACCTCAACAGCCCTCAGCCTGTGGCTTCCCGGCCGGAAACGCCTCCTGGGCCAGGCG
CAGCCGAGGACCGGTAA

Domains

Predicted by InterproScan.

• Toprim domain (Toprim_4) (81-169)

• RecR protein (RecR_ZnF) (40-78)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recR	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	84.08	92.202	0.775