Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QYM22_RS09655 Genome accession   NZ_CP129342
Coordinates   1854487..1855389 (+) Length   300 a.a.
NCBI ID   WP_046128973.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1849487..1860389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS09635 (QYM22_09635) - 1850183..1851859 (+) 1677 WP_231947445.1 hypothetical protein -
  QYM22_RS09640 (QYM22_09640) - 1851856..1852134 (+) 279 WP_046128976.1 FlhB-like flagellar biosynthesis protein -
  QYM22_RS09645 (QYM22_09645) sucC 1852311..1853471 (+) 1161 WP_046128975.1 ADP-forming succinate--CoA ligase subunit beta -
  QYM22_RS09650 (QYM22_09650) sucD 1853491..1854393 (+) 903 WP_046128974.1 succinate--CoA ligase subunit alpha -
  QYM22_RS09655 (QYM22_09655) dprA 1854487..1855389 (+) 903 WP_046128973.1 DNA-processing protein DprA Machinery gene
  QYM22_RS09660 (QYM22_09660) topA 1855595..1857670 (+) 2076 WP_046128972.1 type I DNA topoisomerase -
  QYM22_RS09665 (QYM22_09665) trmFO 1857747..1859051 (+) 1305 WP_046128971.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QYM22_RS09670 (QYM22_09670) xerC 1859118..1860032 (+) 915 WP_046128970.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33149.22 Da        Isoelectric Point: 9.8887

>NTDB_id=852482 QYM22_RS09655 WP_046128973.1 1854487..1855389(+) (dprA) [Bacillus glycinifermentans strain SRCM12603]
MNDKCGLLILLRLYSNLSPSLLFKWWKEDPSLSLAEDKNHSLKKLSSKSINVGAIRKLAEKELPNVKQIIASYRENGISV
IAISSPEYPPLLKTIHDPPPVLFLKGNKTLLYEKRLIGIVGTRNPSQYGENAASYFARALSKKEWTIVSGLAKGIDGHAH
RETIRSKGRTIGIIAGGFNCIYPRENRLLAQQMAESHLLVSEHLPDTKPQKWHFPQRNRLISGLTEGIVVIQGKEKSGSL
ITAYQALEQGREVFAVPGSIFDENSKGPAGLIQEGAKLVSSVDDILGELPAFQARYTESV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=852482 QYM22_RS09655 WP_046128973.1 1854487..1855389(+) (dprA) [Bacillus glycinifermentans strain SRCM12603]
ATGAATGACAAGTGCGGGCTTTTAATATTGCTTCGCCTGTACAGCAACCTTTCCCCTTCCCTCTTGTTTAAATGGTGGAA
GGAAGACCCGTCCTTATCGCTTGCGGAAGATAAGAACCACTCTCTAAAAAAGCTGTCATCGAAAAGCATAAACGTCGGCG
CCATCCGAAAGCTGGCCGAAAAAGAGCTTCCGAATGTTAAGCAGATCATCGCAAGCTACCGCGAAAACGGAATAAGCGTA
ATTGCGATTTCGTCCCCTGAATATCCACCCCTGCTGAAAACGATCCACGACCCGCCTCCCGTTCTTTTTCTCAAAGGAAA
CAAAACCCTTCTTTATGAAAAAAGGCTCATCGGCATTGTGGGAACCCGAAATCCTTCACAGTACGGCGAAAATGCGGCTT
CCTACTTTGCCAGAGCGCTCAGCAAAAAGGAATGGACAATCGTCAGCGGGCTTGCCAAAGGGATCGACGGTCACGCCCAT
CGGGAGACAATCCGTTCAAAAGGAAGAACGATCGGCATCATCGCCGGCGGATTCAACTGCATATATCCTCGTGAAAACCG
TCTGCTTGCCCAACAGATGGCCGAAAGCCATCTTCTGGTGTCAGAGCACCTACCCGATACAAAACCCCAAAAATGGCACT
TTCCGCAGCGAAATCGGCTGATCAGCGGCTTAACAGAAGGAATCGTCGTCATTCAGGGCAAGGAAAAAAGCGGCTCGCTC
ATCACCGCCTACCAGGCGCTCGAACAAGGCAGGGAAGTATTTGCGGTGCCTGGTTCAATATTTGACGAAAATTCAAAAGG
ACCGGCCGGGCTGATCCAGGAAGGAGCAAAACTCGTCTCAAGCGTAGACGATATTCTCGGTGAGCTTCCGGCATTTCAGG
CCCGTTATACGGAATCCGTTTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

56.376

99.333

0.56
  dprA Legionella pneumophila strain ERS1305867

40

100

0.407
  dprA Lactococcus lactis subsp. cremoris KW2

39.35

92.333

0.363