Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   QYR55_RS06670 Genome accession   NZ_CP129328
Coordinates   1360759..1361469 (-) Length   236 a.a.
NCBI ID   WP_367562534.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355759..1366469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS06655 (QYR55_06660) rnc 1357799..1358491 (-) 693 WP_003101331.1 ribonuclease III -
  QYR55_RS06660 (QYR55_06665) - 1358594..1359404 (-) 811 Protein_1256 MBL fold metallo-hydrolase -
  QYR55_RS06665 (QYR55_06670) vicK 1359408..1360766 (-) 1359 WP_003101335.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QYR55_RS06670 (QYR55_06675) vicR 1360759..1361469 (-) 711 WP_367562534.1 response regulator YycF Regulator
  QYR55_RS06675 (QYR55_06680) - 1361726..1362523 (+) 798 WP_003101338.1 amino acid ABC transporter ATP-binding protein -
  QYR55_RS06680 (QYR55_06685) - 1362520..1363338 (+) 819 WP_367562535.1 transporter substrate-binding domain-containing protein -
  QYR55_RS06685 (QYR55_06690) - 1363353..1364054 (+) 702 WP_367561393.1 amino acid ABC transporter permease -
  QYR55_RS06690 (QYR55_06695) - 1364070..1364717 (+) 648 WP_121791610.1 amino acid ABC transporter permease -
  QYR55_RS06695 (QYR55_06700) - 1364755..1365762 (-) 1008 WP_367561394.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27058.90 Da        Isoelectric Point: 5.0030

>NTDB_id=852266 QYR55_RS06670 WP_367562534.1 1360759..1361469(-) (vicR) [Streptococcus iniae strain Si 1-19]
MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAVTLFEEEKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIVMLSA
KDSEFDKIIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASAGNQELTIGNLQILPDAFLAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSHD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=852266 QYR55_RS06670 WP_367562534.1 1360759..1361469(-) (vicR) [Streptococcus iniae strain Si 1-19]
ATGAAGAAAATTCTTATAGTTGATGATGAAAAACCGATTTCAGATATCATCAAATTTAATTTAACAAAAGAAGGATATGA
AACGGTGACAGCTTTTGATGGACGTGAAGCAGTTACCTTGTTTGAAGAAGAAAAACCAGACTTGGTTATTTTAGATTTGA
TGTTACCTGAAATGGATGGTTTAGAAGTTGCTAAAGAAATTCGTAAAACAAGCCACATTCCAATTGTTATGTTATCAGCA
AAAGATAGTGAGTTTGATAAGATCATCGGTCTTGAAATTGGTGCAGATGACTATGTGACAAAACCATTTTCTAATCGTGA
GCTATTAGCTCGTGTTAAGGCGCATTTGCGCCGTACAGAAACCATCGAAACAGCAGTTGCTGAAGAAAATGCCTCAGCTG
GTAATCAAGAGTTAACGATTGGCAACCTTCAAATCTTGCCAGATGCCTTTTTAGCTAAAAAGCATGGTCAAGAGGTTGAG
TTAACCCACCGTGAATTTGAATTATTGCATCACTTAGCCAACCATATTGGGCAAGTAATGACTCGTGAACATTTGCTTGA
AACTGTTTGGGGCTATGATTATTTTGGTGATGTTAGAACAGTTGACGTAACGGTACGTCGTTTGCGAGAAAAAATCGAAG
ATACTCCTAGCCGTCCTGAATATATTTTGACAAGACGAGGAGTTGGATACTACATGAAATCACATGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

87.712

100

0.877
  micA Streptococcus pneumoniae Cp1015

77.447

99.576

0.771
  covR Streptococcus salivarius strain HSISS4

43.966

98.305

0.432
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.103

98.305

0.424
  scnR Streptococcus mutans UA159

37.768

98.729

0.373