Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6S35_RS22580 Genome accession   NZ_CP145668
Coordinates   4583165..4583902 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain S1-CHI-01-A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4578165..4588902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S35_RS22555 (V6S35_22555) - 4579261..4579521 (+) 261 WP_000488105.1 ogr/Delta-like zinc finger family protein -
  V6S35_RS22560 (V6S35_22560) - 4579713..4579853 (+) 141 WP_000078920.1 Hok/Gef family protein -
  V6S35_RS22565 (V6S35_22565) - 4580385..4581854 (+) 1470 WP_032167339.1 AAA family ATPase -
  V6S35_RS22570 (V6S35_22570) - 4582102..4582401 (+) 300 Protein_4406 site-specific DNA-methyltransferase -
  V6S35_RS22575 (V6S35_22575) raiA 4582553..4582894 (-) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  V6S35_RS22580 (V6S35_22580) comL 4583165..4583902 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V6S35_RS22585 (V6S35_22585) rluD 4584037..4585017 (+) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6S35_RS22590 (V6S35_22590) yfiH 4585014..4585745 (+) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  V6S35_RS22595 (V6S35_22595) clpC 4585875..4588448 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=851971 V6S35_RS22580 WP_000197686.1 4583165..4583902(-) (comL) [Escherichia coli strain S1-CHI-01-A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=851971 V6S35_RS22580 WP_000197686.1 4583165..4583902(-) (comL) [Escherichia coli strain S1-CHI-01-A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376