Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6S40_RS08250 Genome accession   NZ_CP145657
Coordinates   1669426..1670163 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain S1-IND-01-A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664426..1675163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S40_RS08235 (V6S40_08240) clpC 1664880..1667453 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  V6S40_RS08240 (V6S40_08245) yfiH 1667583..1668314 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  V6S40_RS08245 (V6S40_08250) rluD 1668311..1669291 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6S40_RS08250 (V6S40_08255) comL 1669426..1670163 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V6S40_RS08255 (V6S40_08260) raiA 1670434..1670775 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V6S40_RS08260 (V6S40_08265) pheL 1670879..1670926 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V6S40_RS08265 (V6S40_08270) pheA 1671025..1672185 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  V6S40_RS08270 (V6S40_08275) tyrA 1672228..1673349 (-) 1122 WP_273655420.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V6S40_RS08275 (V6S40_08280) aroF 1673360..1674430 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V6S40_RS08280 (V6S40_08285) yfiL 1674640..1675005 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=851677 V6S40_RS08250 WP_000197686.1 1669426..1670163(+) (comL) [Escherichia coli strain S1-IND-01-A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=851677 V6S40_RS08250 WP_000197686.1 1669426..1670163(+) (comL) [Escherichia coli strain S1-IND-01-A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376