Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QVG61_RS10990 Genome accession   NZ_CP128988
Coordinates   2380165..2380620 (-) Length   151 a.a.
NCBI ID   WP_289930683.1    Uniprot ID   -
Organism   Thiohalobacter sp. IOR34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2375165..2385620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVG61_RS10965 (QVG61_10965) - 2375491..2377212 (-) 1722 WP_289930679.1 penicillin-binding transpeptidase domain-containing protein -
  QVG61_RS10970 (QVG61_10970) ftsL 2377209..2377439 (-) 231 WP_289932771.1 cell division protein FtsL -
  QVG61_RS10975 (QVG61_10975) rsmH 2377469..2378404 (-) 936 WP_289930680.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  QVG61_RS10980 (QVG61_10980) mraZ 2378656..2379108 (-) 453 WP_289930681.1 division/cell wall cluster transcriptional repressor MraZ -
  QVG61_RS10985 (QVG61_10985) - 2379453..2379665 (+) 213 WP_289930682.1 hypothetical protein -
  QVG61_RS10990 (QVG61_10990) ssb 2380165..2380620 (-) 456 WP_289930683.1 single-stranded DNA-binding protein Machinery gene
  QVG61_RS10995 (QVG61_10995) - 2380685..2382070 (-) 1386 WP_289930684.1 MFS transporter -
  QVG61_RS11000 (QVG61_11000) uvrA 2382147..2384993 (+) 2847 WP_289930685.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16298.11 Da        Isoelectric Point: 5.2797

>NTDB_id=850233 QVG61_RS10990 WP_289930683.1 2380165..2380620(-) (ssb) [Thiohalobacter sp. IOR34]
MARGINKVILVGNLGKDPEVRYMPSGGAVANVTIATSEQWKDKQTGEQRERTEWHNVVFYQRLAEIVGEYLKKGSQVYVE
GSLRTRKWQDKNGNDRYTTEIIASEMQMLGGRGGGGGGYGQSAPATAPAAKPAAAESGGGLDSDFDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=850233 QVG61_RS10990 WP_289930683.1 2380165..2380620(-) (ssb) [Thiohalobacter sp. IOR34]
ATGGCGCGAGGCATCAACAAGGTCATTCTGGTTGGCAATCTGGGCAAGGACCCGGAGGTACGCTACATGCCGAGTGGCGG
TGCCGTGGCCAACGTCACCATCGCCACCAGCGAGCAATGGAAGGACAAGCAGACCGGTGAGCAAAGGGAGCGCACCGAGT
GGCACAACGTGGTCTTCTATCAGCGCCTGGCCGAGATCGTCGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTCGAG
GGCAGCCTGCGCACCCGCAAGTGGCAGGACAAGAACGGCAACGACCGCTACACCACCGAGATCATCGCCAGCGAGATGCA
GATGCTCGGCGGTCGCGGTGGGGGCGGCGGCGGTTACGGCCAGTCGGCGCCGGCCACGGCGCCTGCCGCCAAACCGGCCG
CGGCCGAGAGCGGCGGTGGTCTGGACAGCGACTTCGACGACGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.286

100

0.629
  ssb Glaesserella parasuis strain SC1401

51.111

100

0.609
  ssb Neisseria meningitidis MC58

47.399

100

0.543
  ssb Neisseria gonorrhoeae MS11

47.399

100

0.543