Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F99_RS10595 Genome accession   NZ_CP145053
Coordinates   2026506..2026934 (-) Length   142 a.a.
NCBI ID   WP_017147177.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_beta_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2021506..2031934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F99_RS10560 (V5F99_10590) pilE 2022105..2022500 (-) 396 WP_353165085.1 pilin Machinery gene
  V5F99_RS10565 (V5F99_10595) - 2022852..2023250 (-) 399 Protein_2041 pilin -
  V5F99_RS10570 (V5F99_10600) - 2023412..2023744 (-) 333 Protein_2042 pilin -
  V5F99_RS10575 (V5F99_10605) - 2023763..2024154 (-) 392 Protein_2043 pilin -
  V5F99_RS10580 (V5F99_10610) - 2024764..2025123 (-) 360 Protein_2044 pilin -
  V5F99_RS10585 (V5F99_10615) - 2025164..2025562 (-) 399 Protein_2045 pilin -
  V5F99_RS10590 (V5F99_10620) - 2026100..2026453 (-) 354 Protein_2046 pilin -
  V5F99_RS10595 (V5F99_10625) pilE 2026506..2026934 (-) 429 WP_017147177.1 pilin Machinery gene
  V5F99_RS10600 (V5F99_10630) - 2026986..2027294 (+) 309 Protein_2048 NAD(P)-dependent oxidoreductase -
  V5F99_RS10605 (V5F99_10635) metG 2027369..2029423 (-) 2055 WP_047919415.1 methionine--tRNA ligase -
  V5F99_RS10610 (V5F99_10640) glmS 2029539..2031377 (-) 1839 WP_047922618.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15391.38 Da        Isoelectric Point: 8.9654

>NTDB_id=849599 V5F99_RS10595 WP_017147177.1 2026506..2026934(-) (pilE) [Neisseria gonorrhoeae strain WHO_beta_2024]
MASPASDIKGKYVQSVTVANGVVTAQMKSDGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKI
ETKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=849599 V5F99_RS10595 WP_017147177.1 2026506..2026934(-) (pilE) [Neisseria gonorrhoeae strain WHO_beta_2024]
GTGGCATCCCCCGCCTCCGACATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCCAAAT
GAAATCAGACGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATC
GAAACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCG
CGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(5-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.455

61.972

0.437
  pilE Neisseria gonorrhoeae MS11

68.889

63.38

0.437