Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F98_RS11595 Genome accession   NZ_CP145052
Coordinates   2182529..2182999 (-) Length   156 a.a.
NCBI ID   WP_144996902.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_F_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177529..2187999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F98_RS11560 (V5F98_11575) - 2177880..2178080 (-) 201 WP_002212530.1 hypothetical protein -
  V5F98_RS11565 (V5F98_11580) - 2178084..2178395 (-) 312 WP_003694611.1 hypothetical protein -
  V5F98_RS11570 (V5F98_11585) - 2178407..2179621 (-) 1215 WP_003694614.1 replication initiation factor domain-containing protein -
  V5F98_RS11575 (V5F98_11590) pilE 2180322..2180618 (-) 297 WP_269472844.1 pilin Machinery gene
  V5F98_RS11580 (V5F98_11595) pilE 2180657..2181088 (-) 432 WP_106278828.1 pilin Machinery gene
  V5F98_RS11585 (V5F98_11600) - 2181604..2181948 (-) 345 Protein_2245 pilin -
  V5F98_RS11590 (V5F98_11605) - 2182152..2182502 (-) 351 Protein_2246 pilin -
  V5F98_RS11595 (V5F98_11610) pilE 2182529..2182999 (-) 471 WP_144996902.1 pilin Machinery gene
  V5F98_RS11600 (V5F98_11615) pilE 2182932..2183456 (-) 525 WP_106278765.1 pilin Machinery gene
  V5F98_RS11605 (V5F98_11620) - 2183595..2183948 (-) 354 Protein_2249 pilin -
  V5F98_RS11610 (V5F98_11625) - 2183989..2184192 (-) 204 Protein_2250 pilin -
  V5F98_RS11615 (V5F98_11630) - 2184768..2185457 (-) 690 WP_003705080.1 SprT family zinc-dependent metalloprotease -
  V5F98_RS11620 (V5F98_11635) - 2185454..2186197 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5F98_RS11625 (V5F98_11640) gmhB 2186227..2186790 (-) 564 WP_047919691.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17390.61 Da        Isoelectric Point: 10.3068

>NTDB_id=849527 V5F98_RS11595 WP_144996902.1 2182529..2182999(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
MAERQRFCRRGIPPTDIKGKYVKSVTVENGVVTAQMASTGVNKEIQDKRLSLWAKRENGSVKWFCGQPVKRDNANAAKDD
VTATMNSSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVQRDNAADPNDAVKDVTDANGKISTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 471 bp        

>NTDB_id=849527 V5F98_RS11595 WP_144996902.1 2182529..2182999(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
ATGGCCGAAAGACAACGCTTCTGCCGGCGTGGCATCCCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGT
CGAAAACGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAAGACAAAAGACTCTCCCTGTGGG
CCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGCCAAAGACGAC
GTCACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGA
CGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGACAACGCCGCCGACCCCAACGACGCCGTCAAAGACGTCA
CCGACGCCAACGGCAAAATCAGCACCAAGCACCTGCCGTCAACCTGCCGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-69)

Pilin (bacterial filament) (Pilin)

(75-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

42.771

100

0.455
  pilE Neisseria gonorrhoeae MS11

46.154

91.667

0.423