Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G06_RS02680 Genome accession   NZ_CP145048
Coordinates   517247..517912 (+) Length   221 a.a.
NCBI ID   WP_003690897.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_K_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512247..522912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G06_RS02655 (V5G06_02660) cysT 512370..513199 (-) 830 Protein_512 sulfate ABC transporter permease subunit CysT -
  V5G06_RS02660 (V5G06_02665) - 513385..513717 (+) 333 WP_003687908.1 hypothetical protein -
  V5G06_RS02665 (V5G06_02670) - 514047..514556 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G06_RS02670 (V5G06_02675) - 514788..515369 (-) 582 WP_003690895.1 superoxide dismutase -
  V5G06_RS02675 (V5G06_02680) dnaB 515533..516939 (+) 1407 WP_003690896.1 replicative DNA helicase -
  V5G06_RS02680 (V5G06_02685) pilH 517247..517912 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G06_RS02685 (V5G06_02690) pilV/pilI 517944..518552 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Regulator
  V5G06_RS02690 (V5G06_02695) pilJ 518549..519490 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  V5G06_RS02695 (V5G06_02700) pilK 519469..520077 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G06_RS02700 (V5G06_02705) pilL 520079..520552 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  V5G06_RS02705 (V5G06_02710) - 521164..521609 (-) 446 Protein_522 AzlC family ABC transporter permease -
  V5G06_RS02710 (V5G06_02715) dut 521775..522227 (+) 453 WP_003690909.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.05 Da        Isoelectric Point: 9.4066

>NTDB_id=849330 V5G06_RS02680 WP_003690897.1 517247..517912(+) (pilH) [Neisseria gonorrhoeae strain WHO_K_2024]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDLGKKEQGMLAFGDKNDNKAYDGDSADVFLRNVVLNDDIKDKRINYTFNHIAFGQTRSTADRVVWTFNQNGTFGYSS
DRNLKNNSKFVYSDGYIQIVLTDAKAVSAGEKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=849330 V5G06_RS02680 WP_003690897.1 517247..517912(+) (pilH) [Neisseria gonorrhoeae strain WHO_K_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTGGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGTGA
TTCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCGGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGGTGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

82.805

100

0.828