Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | JUH08_RS01955 | Genome accession | NZ_AP024354 |
| Coordinates | 427616..428761 (+) | Length | 381 a.a. |
| NCBI ID | WP_061903063.1 | Uniprot ID | A0AA37CEW7 |
| Organism | Aquipseudomonas alcaligenes strain KAM426 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 422616..433761
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JUH08_RS01930 (KAM426_03890) | - | 424026..424322 (-) | 297 | WP_061903059.1 | DUF167 domain-containing protein | - |
| JUH08_RS01935 (KAM426_03900) | - | 424324..424917 (-) | 594 | WP_203790058.1 | YggT family protein | - |
| JUH08_RS01940 (KAM426_03910) | proC | 424927..425745 (-) | 819 | WP_142135900.1 | pyrroline-5-carboxylate reductase | - |
| JUH08_RS01945 (KAM426_03920) | - | 425759..426451 (-) | 693 | WP_203790060.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| JUH08_RS01950 (KAM426_03930) | pilT | 426524..427558 (+) | 1035 | WP_021699006.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| JUH08_RS01955 (KAM426_03940) | pilU | 427616..428761 (+) | 1146 | WP_061903063.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| JUH08_RS01960 (KAM426_03950) | - | 428715..429599 (-) | 885 | WP_203790062.1 | TIGR03915 family putative DNA repair protein | - |
| JUH08_RS01965 (KAM426_03960) | - | 429599..430810 (-) | 1212 | WP_203790064.1 | putative DNA modification/repair radical SAM protein | - |
| JUH08_RS01970 (KAM426_03970) | - | 430960..431358 (+) | 399 | WP_061903065.1 | TM2 domain-containing protein | - |
| JUH08_RS01975 (KAM426_03980) | - | 431414..432685 (-) | 1272 | WP_203790066.1 | dihydroorotase | - |
| JUH08_RS01980 (KAM426_03990) | - | 432685..433686 (-) | 1002 | WP_061903067.1 | aspartate carbamoyltransferase catalytic subunit | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 42614.90 Da Isoelectric Point: 6.8370
>NTDB_id=84926 JUH08_RS01955 WP_061903063.1 427616..428761(+) (pilU) [Aquipseudomonas alcaligenes strain KAM426]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVTKNPMSPEQTRETVHSVMNEQQRREFAEKHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTLDDLKLPEVLKKLALTKRGLVLFVGATGTGKSTSLAAMIGYRNKNTSGHIISIED
PIEYIHQHQNCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLALATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKGLMKRSTELGMQTFDQA
LYNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLTSMSEGLSLQVSEDDPGRRFR
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVTKNPMSPEQTRETVHSVMNEQQRREFAEKHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTLDDLKLPEVLKKLALTKRGLVLFVGATGTGKSTSLAAMIGYRNKNTSGHIISIED
PIEYIHQHQNCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLALATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKGLMKRSTELGMQTFDQA
LYNLYSQGEITYEDALLYADSANDLRLMIKLGSETDGEHLTSMSEGLSLQVSEDDPGRRFR
Nucleotide
Download Length: 1146 bp
>NTDB_id=84926 JUH08_RS01955 WP_061903063.1 427616..428761(+) (pilU) [Aquipseudomonas alcaligenes strain KAM426]
ATGGAATTTGAAAAGCTGCTGCGTCTGATGGTGGAGAAGGGTGGTTCCGACCTGTTCATCACCGCCGGCGTGCCTCCCTC
GATGAAGGTCAATGGCAAGATCATGCCGGTGACCAAGAATCCCATGTCGCCGGAGCAGACCCGCGAGACGGTGCACTCGG
TGATGAACGAGCAGCAGCGCCGCGAGTTCGCCGAAAAGCACGAGTGCAACTTCGCCATCAGCGCCCGTGGCATTGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGCAGGCATGGTGCTGCGCCGGATCGAGACCAATATCCCGACCCTCGA
TGACCTCAAGCTGCCCGAGGTGCTGAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGTA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACACCAGCGGCCACATCATCTCCATCGAAGAC
CCGATCGAGTACATCCACCAGCACCAGAACTGCATCGTCACCCAGCGCGAGGTCGGTATCGATACCGAATCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATTCTGATCGGCGAGATCCGTACCCGCGAGACCATGGACTATG
CCGTGGCCTTCGCTGAAACCGGCCACCTGGCCCTGGCGACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTGTGGATGGACCTGTCGCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGACGGCAAGGGCCGGCGTGCGGTGATCGAGGTGCTGATCAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTCAAGGGCCTGATGAAGCGCTCCACCGAGCTGGGCATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACAGCCAGGGCGAGATCACCTACGAGGACGCCCTGCTGTACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTGGGTTCGGAGACCGACGGCGAGCACCTCACCAGCATGAGCGAAGGCCTCAGCCTGCAGGTGAGCGAGG
ACGATCCGGGCCGGCGTTTCCGCTAG
ATGGAATTTGAAAAGCTGCTGCGTCTGATGGTGGAGAAGGGTGGTTCCGACCTGTTCATCACCGCCGGCGTGCCTCCCTC
GATGAAGGTCAATGGCAAGATCATGCCGGTGACCAAGAATCCCATGTCGCCGGAGCAGACCCGCGAGACGGTGCACTCGG
TGATGAACGAGCAGCAGCGCCGCGAGTTCGCCGAAAAGCACGAGTGCAACTTCGCCATCAGCGCCCGTGGCATTGGCCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGCAGGCATGGTGCTGCGCCGGATCGAGACCAATATCCCGACCCTCGA
TGACCTCAAGCTGCCCGAGGTGCTGAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGTA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACACCAGCGGCCACATCATCTCCATCGAAGAC
CCGATCGAGTACATCCACCAGCACCAGAACTGCATCGTCACCCAGCGCGAGGTCGGTATCGATACCGAATCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATTCTGATCGGCGAGATCCGTACCCGCGAGACCATGGACTATG
CCGTGGCCTTCGCTGAAACCGGCCACCTGGCCCTGGCGACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTGTGGATGGACCTGTCGCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGACGGCAAGGGCCGGCGTGCGGTGATCGAGGTGCTGATCAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTCAAGGGCCTGATGAAGCGCTCCACCGAGCTGGGCATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACAGCCAGGGCGAGATCACCTACGAGGACGCCCTGCTGTACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTGGGTTCGGAGACCGACGGCGAGCACCTCACCAGCATGAGCGAAGGCCTCAGCCTGCAGGTGAGCGAGG
ACGATCCGGGCCGGCGTTTCCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
92.388 |
100 |
0.924 |
| pilU | Acinetobacter baylyi ADP1 |
64.986 |
93.701 |
0.609 |
| pilU | Vibrio cholerae strain A1552 |
59.429 |
91.864 |
0.546 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.452 |
88.189 |
0.383 |