Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G08_RS10755 Genome accession   NZ_CP145037
Coordinates   2055427..2055570 (-) Length   47 a.a.
NCBI ID   WP_047925941.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_O_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050427..2060570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G08_RS10740 (V5G08_10790) pilA 2051809..2053062 (+) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G08_RS10745 (V5G08_10795) - 2053326..2054135 (-) 810 WP_115304476.1 opacity family porin -
  V5G08_RS10750 (V5G08_10800) - 2054549..2055057 (-) 509 Protein_2078 pilin -
  V5G08_RS10755 (V5G08_10805) pilE 2055427..2055570 (-) 144 WP_047925941.1 hypothetical protein Machinery gene
  V5G08_RS10760 (V5G08_10810) - 2055873..2055991 (-) 119 Protein_2080 pilin -
  V5G08_RS10765 (V5G08_10815) - 2056114..2056511 (-) 398 Protein_2081 pilin -
  V5G08_RS10770 (V5G08_10820) lpxC 2056639..2057562 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G08_RS10775 (V5G08_10830) pilE 2058276..2058695 (-) 420 WP_115304478.1 pilin Machinery gene
  V5G08_RS10780 (V5G08_10835) - 2058791..2059228 (-) 438 Protein_2084 pilin -
  V5G08_RS10785 (V5G08_10840) - 2059755..2060468 (-) 714 WP_106350327.1 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5035.49 Da        Isoelectric Point: 6.1878

>NTDB_id=849159 V5G08_RS10755 WP_047925941.1 2055427..2055570(-) (pilE) [Neisseria gonorrhoeae strain WHO_O_2024]
MTGFNDAAGNDKIDTKHLPSTCRDESSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=849159 V5G08_RS10755 WP_047925941.1 2055427..2055570(-) (pilE) [Neisseria gonorrhoeae strain WHO_O_2024]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.333

63.83

0.468