Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QTN52_RS12560 Genome accession   NZ_CP128551
Coordinates   2564851..2565651 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain SRCM123441     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2559851..2570651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS12530 (QTN52_12530) - 2560392..2561024 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  QTN52_RS12535 (QTN52_12535) - 2561321..2561458 (+) 138 WP_167555495.1 hypothetical protein -
  QTN52_RS12540 (QTN52_12540) - 2561552..2562670 (+) 1119 WP_025649857.1 NADH-dependent flavin oxidoreductase -
  QTN52_RS12545 (QTN52_12545) - 2562797..2563009 (+) 213 WP_029973891.1 spore germination protein -
  QTN52_RS12550 (QTN52_12550) - 2563135..2563347 (+) 213 WP_014418351.1 spore germination protein -
  QTN52_RS12555 (QTN52_12555) alr 2563522..2564703 (+) 1182 WP_017418123.1 alanine racemase -
  QTN52_RS12560 (QTN52_12560) spo0A 2564851..2565651 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  QTN52_RS12565 (QTN52_12565) spoIVB 2565932..2567212 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  QTN52_RS12570 (QTN52_12570) recN 2567376..2569106 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  QTN52_RS12575 (QTN52_12575) argR 2569138..2569587 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  QTN52_RS12580 (QTN52_12580) - 2569684..2570529 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=848851 QTN52_RS12560 WP_003153177.1 2564851..2565651(-) (spo0A) [Bacillus velezensis strain SRCM123441]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=848851 QTN52_RS12560 WP_003153177.1 2564851..2565651(-) (spo0A) [Bacillus velezensis strain SRCM123441]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGGGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97