Detailed information NTG0848520

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QTV67_RS04160
• Genome accession: NZ_CP128531
• Coordinates: 807466..808662 (+)
• Length: 398 a.a.
• NCBI ID: WP_230268904.1
• Uniprot ID: -
• Organism: Mannheimia haemolytica strain 120731
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 802466..813662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTV67_RS04135	-	803123..803617 (+)	495	WP_289333199.1	dihydrofolate reductase	-
QTV67_RS04140	-	803737..803967 (+)	231	WP_006248398.1	YgjV family protein	-
QTV67_RS04145	radA	804022..805401 (-)	1380	WP_040080753.1	DNA repair protein RadA	Machinery gene
QTV67_RS04150	pilA	805582..806061 (+)	480	WP_006248401.1	prepilin peptidase-dependent pilin	Machinery gene
QTV67_RS04155	pilB	806082..807482 (+)	1401	WP_040080755.1	GspE/PulE family protein	Machinery gene
QTV67_RS04160	pilC	807466..808662 (+)	1197	WP_230268904.1	type II secretion system F family protein	Machinery gene
QTV67_RS04165	-	808665..809321 (+)	657	WP_006248404.1	prepilin peptidase	-
QTV67_RS04170	coaE	809357..809992 (+)	636	WP_020831305.1	dephospho-CoA kinase	-
QTV67_RS04175	yacG	809974..810159 (+)	186	WP_006248406.1	DNA gyrase inhibitor YacG	-
QTV67_RS04180	holA	810160..811185 (-)	1026	WP_006253426.1	DNA polymerase III subunit delta	-
QTV67_RS04185	lptE	811228..811716 (-)	489	WP_006251337.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45168.72 Da
• Isoelectric Point: 9.4698

>NTDB_id=848520 QTV67_RS04160 WP_230268904.1 807466..808662(+) (pilC) [Mannheimia haemolytica strain 120731]
MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIRISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQA
LSMLLQNCRNIRLYLWLNELIQHIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGTVLLGTLLLAVIFYLFFAKKSRL
VAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLNAHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGIN
PNVFGAEMAQMLEVGEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIIGVIVGTIIVGLYLPIFDMGALVE

Nucleotide

• Length: 1197 bp

>NTDB_id=848520 QTV67_RS04160 WP_230268904.1 807466..808662(+) (pilC) [Mannheimia haemolytica strain 120731]
ATGACGAAAATCTATGAATTTCATTGGCAAGCCCAGAGCCGATTTGGGCAAAAACAGCGGGGCAAGCGGCTGGCAACGAA
TCGAGACATGTTGGAAAACCTTTTGCTGGCACAAGGTTATCAGCATATTCGGATTAGCCGAAATTTTGTGCTTTCAGCAA
ACCCGAAAAAAGAAGAGGTGAATAGCTTGCTATCACAGCTTGCATTGTTGGTTAATTCTGCCATGCCGTTAAAACAGGCA
TTATCTATGTTGTTGCAAAACTGCCGAAATATCCGCCTTTATCTATGGCTTAATGAGCTGATTCAGCATATTGAAAGTGG
CTATGCTTTTTCACAATCGTTGGAGAAATTGGGTGAATTTGTGACCAATCAGGAAATTCAGCTAATCAAAATGGGCGAAC
AAAGCGGAAAACTGGGCATTATGCTGACTAATTTAGCTGAAAGCCGAGCGAAATTGGAAAAATTGGCGAAAAAAGTGAAG
AAAATCCTGTTCTACCCGGTGATTGTGTTGCTGATTTCGCTCGCTTTATCTATCGGGCTATTGGTTTTGATTGTACCGCA
GTTTGCCCAACTTTATGGCTCAAAAGACAAAACTTTACCCCTCATTACCGATATTTTATTTACCCTTTCCGAATGCTTGA
TTGAGCAAGGCACAGTATTACTTGGCACGTTACTACTAGCGGTCATTTTTTACCTGTTTTTTGCAAAAAAGAGCAGGTTA
GTCGCAAAGTGGAAAATGGCTCTATGGGCTAAAATGCCACTGTTTAGCCGAATTATTGAGCAATCTCGCATTATCTTTTT
CAGCCAAAATATTGCCTTAATGCTGAATGCTCATATTCCGCTTGATGTTGCCTTGAGGTCGTTTTTATCCGAGAAAAATG
ATGACCCGATTTTACAGCAAGAAATTGGCACTATGCTTAATTTGTTACAACAAGGCTACAAATTTTCACAAGGGATCAAC
CCGAATGTGTTTGGTGCTGAGATGGCACAAATGCTTGAGGTTGGGGAGAAAAGTGGCAATGTGGCGAAAATGTGTGAGCA
TATTAGTGAGATGTACCAACAAAAATTAGATTACCAAATTGATATTTTGTCTCAGCTATTAGAACCGATGCTAATGTTGA
TAATAGGTGTGATTGTCGGCACTATTATTGTTGGGCTGTATTTACCGATTTTTGATATGGGGGCTTTGGTGGAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (64-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	53.75	100	0.54
pilC	Haemophilus influenzae Rd KW20	42.394	100	0.427
pilC	Haemophilus influenzae 86-028NP	41.397	100	0.417