Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QTV58_RS00750 Genome accession   NZ_CP128530
Coordinates   150838..151983 (+) Length   381 a.a.
NCBI ID   WP_061887095.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 131633     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 145838..156983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTV58_RS00725 matP 146330..146776 (-) 447 WP_006248769.1 macrodomain Ter protein MatP -
  QTV58_RS00730 - 146869..148506 (+) 1638 WP_021280480.1 AAA family ATPase -
  QTV58_RS00735 fabA 148619..149149 (+) 531 WP_006248767.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  QTV58_RS00740 rfaD 149217..150143 (-) 927 WP_006248766.1 ADP-glyceromanno-heptose 6-epimerase -
  QTV58_RS00745 def 150237..150749 (-) 513 WP_006248765.1 peptide deformylase -
  QTV58_RS00750 dprA 150838..151983 (+) 1146 WP_061887095.1 DNA-processing protein DprA Machinery gene
  QTV58_RS00755 - 152078..153433 (-) 1356 WP_006251920.1 PTS ascorbate transporter subunit IIC -
  QTV58_RS00760 - 153446..153715 (-) 270 WP_061887094.1 PTS sugar transporter subunit IIB -
  QTV58_RS00765 - 153946..154968 (+) 1023 WP_006251921.1 LacI family DNA-binding transcriptional regulator -
  QTV58_RS00770 secE 155081..155494 (+) 414 WP_006248761.1 preprotein translocase subunit SecE -
  QTV58_RS00775 nusG 155496..156059 (+) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  QTV58_RS00780 rplK 156292..156720 (+) 429 WP_006248758.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42205.31 Da        Isoelectric Point: 5.0956

>NTDB_id=848485 QTV58_RS00750 WP_061887095.1 150838..151983(+) (dprA) [Mannheimia haemolytica strain 131633]
MAYQYDLLRLLQVQIGPQRIGRLLAELDFAEFCAYDKTQLRQIGWNEKQIQRWFNPDKNWIEQALTWAEQPNQQILSLFD
KAYPFLLRQISTAPPILFVKGNVESLSLPQIAIVGSRDYSPYGEYWAGQFAADLVKHNMAVTSGLAIGIDGFAHKKVVEY
QGITIAVLGSGLNRIYPARHQKLAEQIVESGGALVSEFSPNQPPIAENFPRRNRIISGLSLGTLVIEATINSGSLITARY
ALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEAVASQYQPQQIPLFDEPKPIVSTSLQAVKSSEKFAKNP
PNLTACQQQIYQHISLEPIAIDDLARATELTIETLLVELLGLELAGVTKQVSGGYVMDNGY

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=848485 QTV58_RS00750 WP_061887095.1 150838..151983(+) (dprA) [Mannheimia haemolytica strain 131633]
ATGGCATATCAGTATGATTTATTGCGTTTGTTGCAGGTGCAAATTGGTCCGCAGCGAATCGGACGGTTATTGGCAGAGTT
GGATTTTGCCGAATTTTGTGCCTACGATAAAACACAGTTAAGGCAGATCGGCTGGAATGAAAAGCAGATTCAGCGTTGGT
TTAATCCGGATAAAAATTGGATTGAGCAGGCACTAACTTGGGCGGAGCAGCCGAATCAGCAAATCCTGAGTTTATTTGAT
AAAGCTTATCCTTTCTTGCTGCGGCAAATTTCCACCGCTCCGCCGATTTTATTTGTAAAGGGTAATGTCGAAAGCCTTTC
CTTACCGCAAATTGCGATTGTTGGGAGTCGGGATTATTCGCCCTACGGTGAATATTGGGCGGGGCAATTTGCCGCTGACT
TGGTGAAGCACAATATGGCGGTGACTAGCGGTTTAGCGATTGGCATTGACGGTTTTGCACATAAAAAAGTAGTGGAATAT
CAAGGTATTACGATTGCTGTGTTGGGCAGTGGCTTAAACCGGATTTACCCCGCACGCCATCAAAAACTGGCTGAACAAAT
TGTCGAGTCAGGTGGTGCGTTGGTGTCTGAATTTTCACCTAATCAGCCTCCGATTGCTGAAAATTTCCCACGCCGAAACC
GCATAATCAGCGGTTTATCGCTCGGCACTTTGGTGATTGAAGCAACCATTAATAGTGGCTCTTTAATTACCGCTCGCTAT
GCCCTTGAACAAGGTCGGGAGGTGTTTGCGTTACCGAATGCGGTGCAAAACCCTTACGCACAAGGTTGCCACAAGCTAAT
TAAAGAAGGGGCGTTGCTTGTGGAGGGGGTGGAAGATATTTTAGAGGCGGTCGCCTCTCAATATCAACCTCAACAAATCC
CTTTGTTTGATGAGCCTAAGCCAATAGTAAGCACATCTTTACAAGCGGTCAAAAGTAGCGAAAAATTTGCAAAAAATCCG
CCAAATCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCTATAGCGATTGACGATTTAGCCAGAGC
TACAGAGTTAACGATTGAGACATTGCTAGTTGAATTACTGGGGCTGGAATTAGCCGGCGTAACTAAACAAGTGAGTGGGG
GGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(316-374)

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.278

100

0.743
  dprA Haemophilus influenzae Rd KW20

51.02

90.026

0.459
  dprA Vibrio campbellii strain DS40M4

45.355

96.063

0.436
  dprA Vibrio cholerae strain A1552

42.033

95.538

0.402
  dprA Legionella pneumophila strain ERS1305867

41.279

90.289

0.373