Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V5100_RS06030 Genome accession   NZ_CP144930
Coordinates   1203809..1204546 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SCPM-O-B-9504     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198809..1209546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5100_RS06005 (V5100_05995) tyrA 1199183..1200304 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V5100_RS06010 (V5100_06000) pheA 1200347..1201507 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  V5100_RS06015 (V5100_06005) pheL 1201606..1201653 (-) 48 WP_010723158.1 phe operon leader peptide -
  V5100_RS06020 (V5100_06010) raiA 1201757..1202098 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V5100_RS06025 (V5100_06015) - 1202430..1203758 (+) 1329 WP_000547316.1 IS4-like element IS4 family transposase -
  V5100_RS06030 (V5100_06020) comL 1203809..1204546 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V5100_RS06035 (V5100_06025) rluD 1204681..1205661 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V5100_RS06040 (V5100_06030) yfiH 1205658..1206389 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  V5100_RS06045 (V5100_06035) clpC 1206519..1209092 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=848400 V5100_RS06030 WP_000197686.1 1203809..1204546(-) (comL) [Escherichia coli strain SCPM-O-B-9504]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=848400 V5100_RS06030 WP_000197686.1 1203809..1204546(-) (comL) [Escherichia coli strain SCPM-O-B-9504]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376