Detailed information NTG0848309

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QTV63_RS04450
• Genome accession: NZ_CP128522
• Coordinates: 866681..867877 (+)
• Length: 398 a.a.
• NCBI ID: WP_230268904.1
• Uniprot ID: -
• Organism: Mannheimia haemolytica strain 182963
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 861681..872877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTV63_RS04425	folA	862338..862832 (+)	495	WP_006248397.1	type 3 dihydrofolate reductase	-
QTV63_RS04430	-	862952..863182 (+)	231	WP_006248398.1	YgjV family protein	-
QTV63_RS04435	radA	863237..864616 (-)	1380	WP_040080753.1	DNA repair protein RadA	Machinery gene
QTV63_RS04440	pilA	864797..865276 (+)	480	WP_006248401.1	prepilin peptidase-dependent pilin	Machinery gene
QTV63_RS04445	pilB	865297..866697 (+)	1401	WP_040080755.1	GspE/PulE family protein	Machinery gene
QTV63_RS04450	pilC	866681..867877 (+)	1197	WP_230268904.1	type II secretion system F family protein	Machinery gene
QTV63_RS04455	-	867880..868536 (+)	657	WP_006248404.1	prepilin peptidase	-
QTV63_RS04460	coaE	868572..869207 (+)	636	WP_020831305.1	dephospho-CoA kinase	-
QTV63_RS04465	yacG	869189..869374 (+)	186	WP_006248406.1	DNA gyrase inhibitor YacG	-
QTV63_RS04470	holA	869375..870400 (-)	1026	WP_006253426.1	DNA polymerase III subunit delta	-
QTV63_RS04475	lptE	870443..870931 (-)	489	WP_006251337.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45168.72 Da
• Isoelectric Point: 9.4698

>NTDB_id=848309 QTV63_RS04450 WP_230268904.1 866681..867877(+) (pilC) [Mannheimia haemolytica strain 182963]
MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIRISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQA
LSMLLQNCRNIRLYLWLNELIQHIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGTVLLGTLLLAVIFYLFFAKKSRL
VAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLNAHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGIN
PNVFGAEMAQMLEVGEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIIGVIVGTIIVGLYLPIFDMGALVE

Nucleotide

• Length: 1197 bp

>NTDB_id=848309 QTV63_RS04450 WP_230268904.1 866681..867877(+) (pilC) [Mannheimia haemolytica strain 182963]
ATGACGAAAATCTATGAATTTCATTGGCAAGCCCAGAGCCGATTTGGGCAAAAACAGCGGGGCAAGCGGCTGGCAACGAA
TCGAGACATGTTGGAAAACCTTTTGCTGGCACAAGGTTATCAGCATATTCGGATTAGCCGAAATTTTGTGCTTTCAGCAA
ACCCGAAAAAAGAAGAGGTGAATAGCTTGCTATCACAGCTTGCATTGTTGGTTAATTCTGCCATGCCGTTAAAACAGGCA
TTATCTATGTTGTTGCAAAACTGCCGAAATATCCGCCTTTATCTATGGCTTAATGAGCTGATTCAGCATATTGAAAGTGG
CTATGCTTTTTCACAATCGTTGGAGAAATTGGGTGAATTTGTGACCAATCAGGAAATTCAGCTAATCAAAATGGGCGAAC
AAAGCGGAAAACTGGGCATTATGCTGACTAATTTAGCTGAAAGCCGAGCGAAATTGGAAAAATTGGCGAAAAAAGTGAAG
AAAATCCTGTTCTACCCGGTGATTGTGTTGCTGATTTCGCTCGCTTTATCTATCGGGCTATTGGTTTTGATTGTACCGCA
GTTTGCCCAACTTTATGGCTCAAAAGACAAAACTTTACCCCTCATTACCGATATTTTATTTACCCTTTCCGAATGCTTGA
TTGAGCAAGGCACAGTATTACTTGGCACGTTACTACTAGCGGTCATTTTTTACCTGTTTTTTGCAAAAAAGAGCAGGTTA
GTCGCAAAGTGGAAAATGGCTCTATGGGCTAAAATGCCACTGTTTAGCCGAATTATTGAGCAATCTCGCATTATCTTTTT
CAGCCAAAATATTGCCTTAATGCTGAATGCTCATATTCCGCTTGATGTTGCCTTGAGGTCGTTTTTATCCGAGAAAAATG
ATGACCCGATTTTACAGCAAGAAATTGGCACTATGCTTAATTTGTTACAACAAGGCTACAAATTTTCACAAGGGATCAAC
CCGAATGTGTTTGGTGCTGAGATGGCACAAATGCTTGAGGTTGGGGAGAAAAGTGGCAATGTGGCGAAAATGTGTGAGCA
TATTAGTGAGATGTACCAACAAAAATTAGATTACCAAATTGATATTTTGTCTCAGCTATTAGAACCGATGCTAATGTTGA
TAATAGGTGTGATTGTCGGCACTATTATTGTTGGGCTGTATTTACCGATTTTTGATATGGGGGCTTTGGTGGAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (64-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	53.75	100	0.54
pilC	Haemophilus influenzae Rd KW20	42.394	100	0.427
pilC	Haemophilus influenzae 86-028NP	41.397	100	0.417