Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   V5G23_RS02055 Genome accession   NZ_CP144925
Coordinates   392558..395524 (-) Length   988 a.a.
NCBI ID   WP_044790184.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387558..400524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS02010 (V5G23_02010) - 387837..388457 (+) 621 WP_003180254.1 HTH-type transcriptional regulator Hpr -
  V5G23_RS02015 (V5G23_02015) - 388454..388801 (-) 348 WP_003180252.1 YhaI family protein -
  V5G23_RS02020 (V5G23_02020) - 389016..389531 (+) 516 WP_003180250.1 DUF3267 domain-containing protein -
  V5G23_RS02025 (V5G23_02025) - 389610..389825 (+) 216 WP_003180249.1 hypothetical protein -
  V5G23_RS02030 (V5G23_02030) - 389880..389978 (-) 99 WP_003180247.1 YjcZ family sporulation protein -
  V5G23_RS02035 (V5G23_02035) - 390106..390192 (-) 87 WP_003180245.1 YjcZ family sporulation protein -
  V5G23_RS02040 (V5G23_02040) - 390356..391216 (+) 861 WP_003180243.1 peptidylprolyl isomerase -
  V5G23_RS02045 (V5G23_02045) - 391262..391495 (-) 234 WP_003180242.1 sporulation YhaL family protein -
  V5G23_RS02050 (V5G23_02050) yhaM 391564..392508 (-) 945 WP_003180239.1 3'-5' exoribonuclease YhaM -
  V5G23_RS02055 (V5G23_02055) sbcE 392558..395524 (-) 2967 WP_044790184.1 AAA family ATPase Machinery gene
  V5G23_RS02060 (V5G23_02060) - 395538..396764 (-) 1227 WP_009328954.1 DNA repair exonuclease -
  V5G23_RS02065 (V5G23_02065) - 396884..398152 (-) 1269 WP_003180232.1 ABC transporter permease -
  V5G23_RS02070 (V5G23_02070) - 398145..399041 (-) 897 WP_003180230.1 ABC transporter ATP-binding protein -
  V5G23_RS02075 (V5G23_02075) - 399159..399344 (+) 186 WP_003180228.1 YhzD family protein -
  V5G23_RS02080 (V5G23_02080) - 399419..399697 (-) 279 WP_003180226.1 hypothetical protein -
  V5G23_RS02085 (V5G23_02085) - 399702..399839 (-) 138 WP_016886158.1 hypothetical protein -

Sequence

Protein


Download         Length: 988 a.a.        Molecular weight: 112747.79 Da        Isoelectric Point: 6.6323

>NTDB_id=848089 V5G23_RS02055 WP_044790184.1 392558..395524(-) (sbcE) [Bacillus licheniformis strain CP13]
MNIHAIHIYGYGKFANQTFRLSPSNLHLIYGLNEAGKTTLMSFIESVLFGFPKTKRYEPKTGVIYGGMLEVGHPDFGQIR
IERTAGKPERVTVYLEDGSTKPEGFLNELLSGIDRQLYKAIYSFDVFGLQEIHKFNRDKIGRFLLFSSLFGSDAISKLDA
GLVKKQEELFKPNGRKPELNQELDRLKRLSEDLKKAKAREGGYYRLLNEKKGAEASIKESGQLLKDLEHLVLQIEQAIEI
LPAAAEMRQLKEQLASLGGSEESRFPEGGLFELEKLESHLHPKAAQLKALEEKKRGLEQRAAAFAPAEDFLEHEAEAEEL
LTAYPFYQSYTEKIASLTEQLHQINGRVQAGLDRLQIEEYDILNADTTYEYEWKLQETVQAYIELRELKRSLDERFEQAR
ADLEEAEQAHAALSNEVMPDDVRKQKEETLGRLASAGGHAGRREELILQLSYLKQEQKVRMKRRRTAFAGALCAAFAAAF
EALFFKEWFPGALLAPILLIFAAFILKKPEPSAAAAFIQKQLDDIDHSGSKGGVSDSALREELWKDDQTRQLLIAKQAEL
RQKEAEYERAIQKFEEWEKDIRPYQEKTERYLKELNLSIDPSFLADAYALIKELREEILKKRDIEKELSRLHAKKASFEA
GLRKLVTSLSLAGGSVQEQVFQLKSELESQKEKLRQKQEADVSLKHAAEQIKELAKEVEYFQSQIAELFQKAGADGREMF
VGLAKRDQARKELTARLGQLKRELGRQDEKAVMLASGHSLAELKGKLAETQEKRARIEKQLTEERQTAANFHAELARLEE
SGAVSELAYQTGMQKERVAELAKKWAAVKLIRQAVQNKIDEHKKVRLPKLLQTAETLLNPLTAGQYEKIYFSETDDSMMV
MRKDGALFCAHELSQATCEQLYLAIRFALALSHQKNVKLPFQLDDSFVHFDQERFKQVLNILKKLSGEDQQILYFTCHEH
VREAFRDEDVILLPSGMKKVEGKEMTNK

Nucleotide


Download         Length: 2967 bp        

>NTDB_id=848089 V5G23_RS02055 WP_044790184.1 392558..395524(-) (sbcE) [Bacillus licheniformis strain CP13]
GTGAATATACATGCGATACATATATACGGATACGGTAAATTCGCCAATCAGACATTCCGCCTGTCTCCTTCAAATCTGCA
TTTGATCTACGGACTCAATGAAGCCGGGAAAACGACGCTCATGTCGTTTATTGAAAGCGTGCTGTTCGGTTTTCCGAAGA
CGAAACGGTACGAGCCGAAAACGGGCGTCATTTACGGGGGGATGCTTGAGGTCGGACACCCTGATTTCGGCCAGATCCGA
ATCGAACGGACGGCCGGAAAGCCCGAGCGGGTCACCGTTTACTTGGAAGACGGCAGCACGAAGCCGGAAGGTTTTTTAAA
TGAGCTGCTGTCAGGCATCGACAGGCAGCTGTATAAAGCGATCTACTCATTTGACGTGTTCGGCCTTCAGGAAATCCATA
AATTCAACCGCGACAAAATCGGCCGTTTTCTGCTGTTTTCAAGTCTGTTCGGCTCTGATGCGATTTCCAAGCTGGATGCC
GGCCTCGTGAAAAAGCAGGAAGAGCTGTTTAAACCGAACGGAAGGAAGCCGGAGCTGAACCAGGAGCTTGATCGGTTAAA
AAGGCTTTCTGAAGATTTGAAAAAGGCGAAAGCGCGGGAAGGCGGCTATTACCGTCTCTTAAACGAAAAAAAAGGCGCTG
AGGCGTCGATAAAGGAAAGCGGACAACTGCTCAAAGATCTTGAGCATCTCGTCTTACAAATCGAGCAGGCCATTGAGATT
CTGCCGGCGGCCGCGGAAATGCGCCAGCTAAAAGAGCAGCTCGCATCCCTCGGCGGCTCAGAAGAAAGCCGTTTCCCCGA
AGGCGGACTTTTCGAGCTCGAAAAGCTCGAATCCCACCTGCATCCAAAAGCGGCTCAGCTGAAGGCGCTGGAAGAAAAAA
AGCGCGGTTTGGAACAGCGCGCCGCCGCTTTTGCACCGGCTGAAGACTTCCTCGAGCACGAAGCCGAAGCGGAAGAGCTT
TTAACGGCGTATCCGTTTTACCAGTCGTATACCGAAAAAATCGCGTCTTTGACTGAACAGCTTCACCAGATAAACGGACG
GGTTCAAGCGGGGCTTGACCGCCTGCAAATCGAGGAATACGATATCCTCAATGCGGACACCACGTATGAATACGAGTGGA
AACTGCAGGAAACAGTTCAGGCATACATAGAGCTGCGCGAACTGAAGCGGTCGCTCGACGAGCGGTTTGAGCAGGCGAGG
GCTGATCTGGAGGAAGCGGAACAGGCCCATGCCGCTCTCAGCAATGAAGTGATGCCCGATGATGTCCGAAAACAAAAGGA
AGAAACCCTTGGCCGCCTTGCGTCCGCCGGCGGTCATGCCGGAAGGCGGGAAGAGCTGATCCTTCAGCTGTCCTATCTGA
AGCAAGAACAAAAAGTTCGGATGAAAAGAAGAAGGACCGCTTTTGCGGGAGCGCTTTGCGCTGCTTTTGCGGCAGCTTTT
GAGGCGCTTTTTTTCAAGGAGTGGTTCCCGGGCGCTTTGCTCGCGCCGATCTTGCTGATATTTGCCGCTTTTATTTTAAA
AAAGCCTGAGCCTTCCGCGGCGGCGGCTTTTATTCAAAAACAGCTGGATGATATTGACCACAGCGGTTCAAAAGGCGGAG
TAAGCGACAGCGCTTTAAGGGAGGAGCTGTGGAAGGACGACCAAACCCGGCAGCTCCTTATCGCCAAACAAGCTGAGCTC
AGACAGAAAGAAGCGGAATATGAAAGAGCGATTCAAAAATTCGAAGAGTGGGAAAAGGATATCCGTCCGTATCAGGAGAA
GACCGAGCGCTATTTAAAAGAGCTGAATCTTTCAATTGACCCGTCATTTTTAGCCGATGCGTACGCTTTGATTAAGGAAC
TCAGAGAGGAAATTTTGAAAAAGCGGGATATCGAGAAGGAACTGAGCCGCCTTCATGCTAAAAAAGCATCCTTTGAAGCG
GGATTGAGAAAGCTTGTCACATCCCTCAGCCTTGCGGGCGGAAGCGTCCAAGAGCAGGTGTTTCAGCTGAAAAGCGAGCT
TGAGTCCCAAAAAGAGAAACTTCGTCAAAAACAGGAAGCAGACGTGTCTTTAAAGCATGCGGCCGAACAAATCAAAGAGC
TGGCGAAAGAGGTGGAATACTTCCAATCTCAAATTGCCGAACTCTTTCAAAAAGCAGGGGCGGACGGCCGTGAGATGTTC
GTCGGACTGGCGAAGCGCGATCAAGCCAGAAAAGAACTAACGGCTAGGCTCGGGCAGCTCAAAAGAGAGCTCGGCAGACA
GGACGAGAAGGCCGTTATGCTCGCCTCAGGCCACTCTCTGGCAGAACTGAAAGGAAAGCTGGCCGAGACTCAGGAAAAAA
GAGCGCGCATAGAAAAGCAGCTGACAGAAGAAAGGCAGACGGCGGCTAATTTCCATGCAGAGCTCGCCAGACTTGAGGAA
TCAGGAGCGGTATCGGAGCTTGCCTATCAGACCGGGATGCAAAAAGAGCGGGTCGCCGAATTGGCCAAAAAGTGGGCAGC
CGTCAAGCTGATCCGGCAGGCGGTCCAAAACAAGATAGATGAACATAAGAAGGTTCGGCTTCCGAAGCTGTTACAGACGG
CTGAAACATTACTGAACCCATTGACTGCCGGACAATACGAAAAAATTTATTTTTCTGAAACAGATGATTCCATGATGGTC
ATGCGGAAAGACGGAGCTCTTTTTTGCGCACACGAACTGTCTCAGGCGACTTGTGAACAGCTCTATTTAGCGATCCGATT
CGCTCTGGCCCTCTCCCATCAAAAGAATGTCAAATTGCCGTTCCAGCTGGATGACAGCTTTGTCCACTTCGACCAAGAGA
GGTTTAAACAAGTGCTGAACATTTTAAAAAAGCTTTCAGGCGAAGATCAGCAAATCTTGTATTTTACGTGTCATGAACAT
GTAAGAGAAGCTTTCCGCGATGAAGATGTGATTCTGCTGCCTTCCGGAATGAAAAAGGTGGAAGGAAAGGAGATGACTAA
CAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

44.57

98.785

0.44