Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   V5G22_RS19720 Genome accession   NZ_CP144920
Coordinates   3828897..3829328 (-) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain CP26     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3823897..3834328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G22_RS19710 (V5G22_19710) hexA 3825386..3827995 (-) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene
  V5G22_RS19715 (V5G22_19715) cotE 3828106..3828654 (-) 549 WP_003181968.1 outer spore coat protein CotE -
  V5G22_RS19720 (V5G22_19720) ymcA 3828897..3829328 (-) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  V5G22_RS19725 (V5G22_19725) miaB 3829330..3830859 (-) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  V5G22_RS19730 (V5G22_19730) - 3831003..3832178 (-) 1176 WP_003181962.1 glycine C-acetyltransferase -
  V5G22_RS19735 (V5G22_19735) tdh 3832194..3833237 (-) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  V5G22_RS19740 (V5G22_19740) - 3833362..3834282 (-) 921 WP_021837473.1 dipeptidase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=848050 V5G22_RS19720 WP_003181967.1 3828897..3829328(-) (ymcA) [Bacillus licheniformis strain CP26]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=848050 V5G22_RS19720 WP_003181967.1 3828897..3829328(-) (ymcA) [Bacillus licheniformis strain CP26]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867