Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   QRA13_RS14040 Genome accession   NZ_CP128184
Coordinates   2884289..2885434 (-) Length   381 a.a.
NCBI ID   WP_224223888.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879289..2890434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS13995 (QRA13_13995) speE 2879586..2880416 (+) 831 WP_003151052.1 spermidine synthase -
  QRA13_RS14000 (QRA13_14000) speB 2880475..2881347 (+) 873 WP_020957975.1 agmatinase -
  QRA13_RS14005 (QRA13_14005) - 2881516..2881734 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  QRA13_RS14010 (QRA13_14010) - 2882325..2882837 (-) 513 WP_224223889.1 stage II sporulation protein M -
  QRA13_RS14015 (QRA13_14015) - 2882881..2883162 (-) 282 WP_007407643.1 hypothetical protein -
  QRA13_RS14020 (QRA13_14020) - 2883348..2883533 (-) 186 WP_029972879.1 DUF4177 domain-containing protein -
  QRA13_RS14025 (QRA13_14025) - 2883568..2883771 (-) 204 WP_007407641.1 hypothetical protein -
  QRA13_RS14030 (QRA13_14030) - 2883785..2883988 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  QRA13_RS14035 (QRA13_14035) - 2884186..2884305 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  QRA13_RS14040 (QRA13_14040) rapF 2884289..2885434 (-) 1146 WP_224223888.1 tetratricopeptide repeat protein Regulator
  QRA13_RS14045 (QRA13_14045) - 2885665..2887020 (+) 1356 WP_224223887.1 YncE family protein -
  QRA13_RS14050 (QRA13_14050) - 2887060..2888436 (+) 1377 WP_224223886.1 YncE family protein -
  QRA13_RS14055 (QRA13_14055) - 2888443..2888951 (-) 509 Protein_2729 bacteriocin biosynthesis protein AlbG -
  QRA13_RS14060 (QRA13_14060) - 2889105..2889533 (+) 429 WP_032869448.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45513.50 Da        Isoelectric Point: 4.5407

>NTDB_id=846515 QRA13_RS14040 WP_224223888.1 2884289..2885434(-) (rapF) [Bacillus velezensis strain YJ0-1 isolate soil]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYFSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDNGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=846515 QRA13_RS14040 WP_224223888.1 2884289..2885434(-) (rapF) [Bacillus velezensis strain YJ0-1 isolate soil]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTTTT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAATGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

77.953

100

0.78
  rapC Bacillus subtilis subsp. subtilis str. 168

56.316

99.738

0.562