Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QRD90_RS08650 Genome accession   NZ_CP128118
Coordinates   1768851..1770083 (+) Length   410 a.a.
NCBI ID   WP_034315395.1    Uniprot ID   A0AAN2PGV7
Organism   Peribacillus frigoritolerans strain LN4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1763851..1775083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS08625 (QRD90_08625) - 1765064..1765789 (+) 726 WP_252297606.1 SDR family oxidoreductase -
  QRD90_RS08630 (QRD90_08630) - 1765870..1766127 (+) 258 WP_053534398.1 DUF3243 domain-containing protein -
  QRD90_RS08635 (QRD90_08635) - 1766370..1767161 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  QRD90_RS08640 (QRD90_08640) - 1767170..1768078 (+) 909 WP_319023470.1 RodZ family helix-turn-helix domain-containing protein -
  QRD90_RS08645 (QRD90_08645) pgsA 1768244..1768828 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRD90_RS08650 (QRD90_08650) cinA 1768851..1770083 (+) 1233 WP_034315395.1 competence/damage-inducible protein A Machinery gene
  QRD90_RS08655 (QRD90_08655) recA 1770434..1771480 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  QRD90_RS08660 (QRD90_08660) rny 1771834..1773393 (+) 1560 WP_034313519.1 ribonuclease Y -
  QRD90_RS08665 (QRD90_08665) - 1773546..1774343 (+) 798 WP_048684720.1 TIGR00282 family metallophosphoesterase -
  QRD90_RS08670 (QRD90_08670) spoVS 1774517..1774777 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44983.29 Da        Isoelectric Point: 5.0424

>NTDB_id=846090 QRD90_RS08650 WP_034315395.1 1768851..1770083(+) (cinA) [Peribacillus frigoritolerans strain LN4]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=846090 QRD90_RS08650 WP_034315395.1 1768851..1770083(+) (cinA) [Peribacillus frigoritolerans strain LN4]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGAATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAAGCCCTTGTCTTGGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCGGGAATGGTTTTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAAATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTTGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCCAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCCGGGTCGGTAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCCAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCGGGGCCGGACGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCACTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38