Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   VXF94_RS00940 Genome accession   NZ_CP143956
Coordinates   281655..282086 (-) Length   143 a.a.
NCBI ID   WP_013352323.1    Uniprot ID   A0A9P1JH41
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 276655..287086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS00930 (VXF94_00930) hexA 278155..280740 (-) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene
  VXF94_RS00935 (VXF94_00935) cotE 280856..281401 (-) 546 WP_013352324.1 outer spore coat protein CotE -
  VXF94_RS00940 (VXF94_00940) ymcA 281655..282086 (-) 432 WP_013352323.1 RicAFT regulatory complex protein RicA family protein Regulator
  VXF94_RS00945 (VXF94_00945) miaB 282089..283618 (-) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  VXF94_RS00950 (VXF94_00950) - 283761..284936 (-) 1176 WP_013352322.1 glycine C-acetyltransferase -
  VXF94_RS00955 (VXF94_00955) tdh 284952..285998 (-) 1047 WP_014470388.1 L-threonine 3-dehydrogenase -
  VXF94_RS00960 (VXF94_00960) spoVS 286255..286515 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16128.29 Da        Isoelectric Point: 5.0213

>NTDB_id=845534 VXF94_RS00940 WP_013352323.1 281655..282086(-) (ymcA) [Bacillus amyloliquefaciens strain Fad 108]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEAIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=845534 VXF94_RS00940 WP_013352323.1 281655..282086(-) (ymcA) [Bacillus amyloliquefaciens strain Fad 108]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGCGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
CACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCCTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JH41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923