Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QSG87_RS01345 Genome accession   NZ_CP127923
Coordinates   252477..252803 (+) Length   108 a.a.
NCBI ID   WP_087513602.1    Uniprot ID   A0A3B7LSX6
Organism   Acinetobacter chinensis strain SAAc573     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 247477..257803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS01320 (QSG87_01320) hemC 248139..249056 (+) 918 WP_087513598.1 hydroxymethylbilane synthase -
  QSG87_RS01325 (QSG87_01325) - 249060..249848 (+) 789 WP_317023873.1 uroporphyrinogen-III synthase -
  QSG87_RS01330 (QSG87_01330) - 249845..250681 (+) 837 WP_317023874.1 hypothetical protein -
  QSG87_RS01335 (QSG87_01335) - 250687..251880 (+) 1194 WP_317023875.1 heme biosynthesis protein HemY -
  QSG87_RS01340 (QSG87_01340) - 251888..252319 (+) 432 WP_087513613.1 thioesterase family protein -
  QSG87_RS01345 (QSG87_01345) hns 252477..252803 (+) 327 WP_087513602.1 H-NS family nucleoid-associated regulatory protein Regulator
  QSG87_RS01350 (QSG87_01350) gspN 252967..253713 (+) 747 WP_317023876.1 type II secretion system protein N -
  QSG87_RS01355 (QSG87_01355) - 253710..254555 (+) 846 WP_317023877.1 type II secretion system protein N -
  QSG87_RS01360 (QSG87_01360) gspD 254598..256877 (+) 2280 WP_317023878.1 type II secretion system secretin GspD -
  QSG87_RS01365 (QSG87_01365) - 256953..257609 (+) 657 WP_087551491.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12248.99 Da        Isoelectric Point: 8.4122

>NTDB_id=845233 QSG87_RS01345 WP_087513602.1 252477..252803(+) (hns) [Acinetobacter chinensis strain SAAc573]
MMPDISNLSVEELKRLQVEAEALIASKKDQAVEDAYNQILDIADKVGLSIEQILEYGSSKRKKGTRKSVEPRYRSKSNPS
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=845233 QSG87_RS01345 WP_087513602.1 252477..252803(+) (hns) [Acinetobacter chinensis strain SAAc573]
ATGATGCCAGACATCAGTAATTTATCAGTTGAAGAGTTAAAGCGTTTACAGGTTGAAGCAGAGGCATTAATTGCATCTAA
AAAAGATCAGGCTGTAGAAGATGCTTATAATCAGATTCTTGATATTGCAGATAAAGTTGGTCTAAGTATCGAACAGATTC
TTGAGTACGGTTCAAGCAAACGTAAAAAAGGTACACGCAAATCTGTAGAGCCACGCTACAGAAGTAAAAGCAATCCATCT
GAAACCTGGACAGGTCGCGGTAAACAGCCACGCTGGTTGGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LSX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815