Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   V2198_RS23855 Genome accession   NZ_CP143900
Coordinates   5137647..5138003 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PA19_NI3_44.22_ST207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5132647..5143003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2198_RS23830 (V2198_23830) - 5133013..5133645 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  V2198_RS23835 (V2198_23835) - 5133710..5134606 (-) 897 WP_073657004.1 radical SAM protein -
  V2198_RS23840 (V2198_23840) - 5134773..5135411 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  V2198_RS23845 (V2198_23845) - 5135497..5136630 (+) 1134 WP_023875121.1 aminotransferase class V-fold PLP-dependent enzyme -
  V2198_RS23850 (V2198_23850) - 5136856..5137632 (-) 777 WP_023875120.1 TatD family hydrolase -
  V2198_RS23855 (V2198_23855) pilZ 5137647..5138003 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  V2198_RS23860 (V2198_23860) - 5138037..5139023 (-) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  V2198_RS23865 (V2198_23865) tmk 5139016..5139648 (-) 633 WP_023099415.1 dTMP kinase -
  V2198_RS23870 (V2198_23870) mltG 5139677..5140726 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  V2198_RS23875 (V2198_23875) pabC 5140732..5141547 (-) 816 WP_003091129.1 aminodeoxychorismate lyase -
  V2198_RS23880 (V2198_23880) fabF 5141547..5142791 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=845013 V2198_RS23855 WP_003091119.1 5137647..5138003(-) (pilZ) [Pseudomonas aeruginosa strain PA19_NI3_44.22_ST207]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=845013 V2198_RS23855 WP_003091119.1 5137647..5138003(-) (pilZ) [Pseudomonas aeruginosa strain PA19_NI3_44.22_ST207]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449