Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   V2199_RS19830 Genome accession   NZ_CP143899
Coordinates   4280278..4280802 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA26_WM3_03.23_ST27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4275278..4285802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2199_RS19810 (V2199_19810) - 4275345..4277816 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  V2199_RS19815 (V2199_19815) pilM 4278001..4279065 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  V2199_RS19820 (V2199_19820) pilN 4279065..4279661 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  V2199_RS19825 (V2199_19825) pilO 4279658..4280281 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  V2199_RS19830 (V2199_19830) comL/pilP 4280278..4280802 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  V2199_RS19835 (V2199_19835) pilQ 4280856..4283000 (+) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  V2199_RS19840 (V2199_19840) aroK 4283012..4283530 (+) 519 WP_003095833.1 shikimate kinase AroK -
  V2199_RS19845 (V2199_19845) aroB 4283580..4284686 (+) 1107 WP_003162482.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=844891 V2199_RS19830 WP_003095836.1 4280278..4280802(+) (comL/pilP) [Pseudomonas aeruginosa strain PA26_WM3_03.23_ST27]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=844891 V2199_RS19830 WP_003095836.1 4280278..4280802(+) (comL/pilP) [Pseudomonas aeruginosa strain PA26_WM3_03.23_ST27]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362