Detailed information NTG0844112

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QP482_RS16915
• Genome accession: NZ_CP127406
• Coordinates: 3696295..3697668 (+)
• Length: 457 a.a.
• NCBI ID: WP_100553378.1
• Uniprot ID: A0AAW4GGG9
• Organism: Stenotrophomonas sp. As-14
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3691295..3702668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP482_RS16900	sucD	3692183..3693058 (-)	876	WP_205406019.1	succinate--CoA ligase subunit alpha	-
QP482_RS16905	sucC	3693080..3694249 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
QP482_RS16910	-	3694627..3696240 (+)	1614	WP_100553377.1	ATP-binding protein	-
QP482_RS16915	pilR	3696295..3697668 (+)	1374	WP_100553378.1	sigma-54 dependent transcriptional regulator	Regulator
QP482_RS16920	pilB	3697735..3699462 (-)	1728	WP_205406020.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QP482_RS16925	comP	3699576..3699986 (-)	411	WP_100553380.1	pilin	Machinery gene
QP482_RS16930	-	3700080..3700976 (-)	897	WP_205406021.1	serine hydrolase domain-containing protein	-
QP482_RS16935	-	3700997..3702109 (-)	1113	WP_205406022.1	isoprenylcysteine carboxylmethyltransferase family protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49668.97 Da
• Isoelectric Point: 6.6449

>NTDB_id=844112 QP482_RS16915 WP_100553378.1 3696295..3697668(+) (pilR) [Stenotrophomonas sp. As-14]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATISKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=844112 QP482_RS16915 WP_100553378.1 3696295..3697668(+) (pilR) [Stenotrophomonas sp. As-14]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTAGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGTGAGATCGCCCAGCACTACCCACGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCAGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGACCCGCCG
CGGAACAAGCCGCGCGCCTGCTCGGCGAATCGCCGGCCATGGACGTGCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGCGTAGGCAAGGAACTGGTCGCACGCACCATCCACGCACAGGGTGCACG
CGCGGCCGGGCCATTCGTGCCGGTCAACTGTGGCGCCATCCCCACCGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGTGCCCACGCCGACAAGCCGGGGCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGTGCGGTTGGCGCGCC
CAGCGAAGAACCGGTAGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAAGACGGGCGTTTCC
GCCACGACCTGTACTACCGCATCAACGTAATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGCG
CTGGCCGCGTCGATCCTGGCACGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCCGCTCTGGACGC
ACTGGCGCAGTACGGCTTCCCCGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCGCTGGCGGAAGAAG
ACCGTATCGGTGCAGACGACCTGCGCCTGCCGCAGCACGCGCCACGCTCACCGGGCAGTGCTGCCCATGCCGAAGCCGTG
GTCGACCTGCACCCGGGCAGTGCCGCCCTGCCCTCGTACATCGAGCAGCTTGAGCGCAGTGCGATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGCGCACTGCGTTACAAGCTGAAGAAGC
TGGGGATGGAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.377	99.781	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49