Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VR616_RS16220 Genome accession   NZ_CP142789
Coordinates   3398859..3399596 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SX23     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3393859..3404596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR616_RS16205 (VR616_16215) clpC 3394313..3396886 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  VR616_RS16210 (VR616_16220) yfiH 3397016..3397747 (-) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  VR616_RS16215 (VR616_16225) rluD 3397744..3398724 (-) 981 WP_258146165.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VR616_RS16220 (VR616_16230) comL 3398859..3399596 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VR616_RS16225 (VR616_16235) raiA 3399867..3400208 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VR616_RS16230 (VR616_16240) pheL 3400312..3400359 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VR616_RS16235 (VR616_16245) pheA 3400458..3401618 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  VR616_RS16240 (VR616_16250) tyrA 3401661..3402782 (-) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VR616_RS16245 (VR616_16255) aroF 3402793..3403863 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VR616_RS16250 (VR616_16260) yfiL 3404073..3404438 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=842085 VR616_RS16220 WP_000197686.1 3398859..3399596(+) (comL) [Escherichia coli strain SX23]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=842085 VR616_RS16220 WP_000197686.1 3398859..3399596(+) (comL) [Escherichia coli strain SX23]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376