Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QP019_RS11125 Genome accession   NZ_CP126978
Coordinates   2295438..2296976 (-) Length   512 a.a.
NCBI ID   WP_285096230.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2290438..2301976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS11110 (QP019_11110) - 2292700..2293623 (-) 924 WP_349293692.1 transposase -
  QP019_RS11115 (QP019_11115) - 2293869..2295005 (-) 1137 WP_285096229.1 transposase -
  QP019_RS11120 (QP019_11120) - 2295061..2295210 (+) 150 Protein_2144 transposase -
  QP019_RS11125 (QP019_11125) comM 2295438..2296976 (-) 1539 WP_285096230.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QP019_RS11130 (QP019_11130) lipA 2297121..2298083 (-) 963 WP_285092600.1 lipoyl synthase -
  QP019_RS11135 (QP019_11135) lipB 2298093..2298803 (-) 711 WP_039150461.1 lipoyl(octanoyl) transferase LipB -
  QP019_RS11140 (QP019_11140) ybeD 2298817..2299092 (-) 276 WP_026211015.1 DUF493 family protein YbeD -
  QP019_RS11145 (QP019_11145) - 2299309..2300493 (-) 1185 WP_285096231.1 serine hydrolase -
  QP019_RS11150 (QP019_11150) - 2300518..2301354 (-) 837 WP_018346349.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56207.88 Da        Isoelectric Point: 9.6782

>NTDB_id=840991 QP019_RS11125 WP_285096230.1 2295438..2296976(-) (comM) [Gallibacterium anatis strain YJ922]
MSLAVVYSRASIGVQAPLITIEVHMSNGAPGLTLVGLPETTVKEARDRVRSALINANFVYPTQRITVNLAPADLPKEGGR
FDLPIALGILAASGQIDAQKLQSFEFIGELALTGKLRSVQGVIPAILAANNAKRELIIAKQNAQEATLVANTQTYFADSL
LDVVSFLNQQQKLPIAQQLPPVSHSKNPHLLDMTDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
TEQEAIETAAINSLVQRCVDYQHWKQRPFRSPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALREP
LESGEIIISRTAAKVTFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENNSEKLKHIVIQARKKQLSRCGKINAHLSGKEIEQYCKLNQDDAIFLENALNKLGLSVRAYHRILRVSRTIADLAGE
EQIQRIHLAEALGYRAMDRLLQRLTANINNAI

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=840991 QP019_RS11125 WP_285096230.1 2295438..2296976(-) (comM) [Gallibacterium anatis strain YJ922]
ATGTCATTAGCAGTTGTTTACAGCCGTGCCTCTATCGGAGTGCAGGCACCATTAATCACGATCGAAGTTCATATGAGTAA
CGGCGCGCCGGGGTTAACCTTGGTCGGCTTACCGGAAACCACCGTAAAAGAGGCAAGAGATCGTGTCCGCAGTGCCTTAA
TCAATGCTAATTTTGTCTATCCGACTCAACGAATCACCGTTAATCTTGCACCGGCAGATCTACCGAAAGAAGGGGGAAGA
TTTGATTTACCAATTGCATTAGGTATCTTAGCAGCTTCAGGGCAAATCGATGCTCAAAAGTTACAATCCTTTGAATTTAT
TGGAGAACTAGCACTAACAGGCAAGTTACGTAGTGTTCAAGGCGTTATTCCAGCTATCTTAGCCGCAAATAATGCTAAAC
GTGAATTAATTATCGCCAAACAAAATGCTCAAGAAGCAACCTTAGTTGCCAACACACAAACCTATTTTGCCGACTCGCTA
TTAGATGTTGTCAGTTTTTTGAATCAACAACAAAAATTGCCGATAGCACAACAATTACCGCCAGTTTCCCATTCTAAAAA
CCCCCATTTACTGGATATGACCGATATTATCGGACAACAACACGCTAAACGAGCTTTACTCATTGCTGCTGCCGGACAGC
ATAATCTCCTCTTTTTAGGGCCACCCGGTACAGGCAAAACTATGTTGGCAAGTCGATTAACAACACTATTGCCAGAGATG
ACAGAACAAGAAGCGATAGAAACTGCTGCCATTAATAGCTTAGTACAACGTTGTGTGGATTATCAGCATTGGAAACAACG
CCCTTTTCGCTCACCACATCACAGTGCCTCAATGGCGGCGTTAGTTGGTGGTGGCACTATTCCTAAACCGGGAGAAATTT
CTCTTGCTCATAATGGTGTACTTTTTTTAGATGAATTACCGGAATTTGATCGAAAAGTGCTTGATGCCTTGCGAGAGCCA
TTAGAGAGTGGCGAAATTATTATCTCTCGTACGGCAGCTAAAGTTACCTTTCCAGCAAAATTTCAACTGATCGCTGCAAT
GAACCCTAGCCCAACAGGGCATTACCAAGGCACACATAACCGTACCTCGCCGCAACAGATTATGCGCTACCTTAATCGGT
TATCCGGTCCATTTCTTGACCGCTTTGATCTCTCAATTGAAGTGCCTTTATTGCCACAAGGTACTTTGCAACAATTACCT
AAAGACGAAAACAACAGTGAAAAATTAAAACATATCGTGATACAGGCGAGGAAAAAACAACTCTCTCGTTGCGGAAAAAT
TAATGCCCATTTATCTGGCAAAGAGATCGAACAATATTGCAAATTAAACCAAGATGATGCCATTTTTCTTGAAAATGCAT
TAAATAAACTTGGGCTTTCTGTTAGAGCCTATCATCGCATTTTACGAGTTTCTCGCACTATCGCCGATCTGGCAGGTGAA
GAACAAATCCAACGCATTCATCTAGCTGAAGCACTAGGTTATCGTGCTATGGATCGATTATTACAGCGTTTAACCGCTAA
TATCAATAACGCCATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

75.74

99.023

0.75
  comM Glaesserella parasuis strain SC1401

75.692

98.828

0.748
  comM Vibrio cholerae strain A1552

65.217

98.828

0.645
  comM Vibrio campbellii strain DS40M4

64.229

98.828

0.635
  comM Legionella pneumophila str. Paris

51.394

98.047

0.504
  comM Legionella pneumophila strain ERS1305867

51.394

98.047

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.38

99.805

0.463