Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   VKP40_RS02635 Genome accession   NZ_CP142355
Coordinates   515250..515915 (+) Length   221 a.a.
NCBI ID   WP_002993195.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain A946     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510250..520915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS02610 (VKP40_02610) - 510403..511803 (+) 1401 WP_326674000.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  VKP40_RS02615 (VKP40_02615) - 511803..512180 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  VKP40_RS02620 (VKP40_02620) cysK 512198..513139 (-) 942 WP_326676022.1 cysteine synthase A -
  VKP40_RS02625 (VKP40_02625) - 513267..513899 (-) 633 WP_111686325.1 YigZ family protein -
  VKP40_RS02630 (VKP40_02630) - 513954..515278 (+) 1325 Protein_466 DEAD/DEAH box helicase -
  VKP40_RS02635 (VKP40_02635) comFC/cflB 515250..515915 (+) 666 WP_002993195.1 ComF family protein Machinery gene
  VKP40_RS02640 (VKP40_02640) hpf 515995..516543 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25221.45 Da        Isoelectric Point: 9.3379

>NTDB_id=840599 VKP40_RS02635 WP_002993195.1 515250..515915(+) (comFC/cflB) [Streptococcus pyogenes strain A946]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPDCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=840599 VKP40_RS02635 WP_002993195.1 515250..515915(+) (comFC/cflB) [Streptococcus pyogenes strain A946]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGATTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGCGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412