Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   VKP39_RS06645 Genome accession   NZ_CP142353
Coordinates   1325953..1326987 (-) Length   344 a.a.
NCBI ID   WP_002988663.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320953..1331987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS06610 (VKP39_06610) - 1321728..1322030 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  VKP39_RS06615 (VKP39_06615) rnpM 1322023..1322319 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  VKP39_RS06620 (VKP39_06620) nusA 1322335..1323492 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  VKP39_RS06625 (VKP39_06625) rimP 1323667..1324203 (-) 537 WP_030127299.1 ribosome maturation factor RimP -
  VKP39_RS06635 (VKP39_06635) trmB 1324463..1325098 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP39_RS06640 (VKP39_06640) ccrZ 1325098..1325889 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP39_RS06645 (VKP39_06645) pptB 1325953..1326987 (-) 1035 WP_002988663.1 ABC transporter permease Regulator
  VKP39_RS06650 (VKP39_06650) pptA 1326990..1327715 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP39_RS06655 (VKP39_06655) - 1327787..1328206 (+) 420 WP_002988659.1 HIT family protein -
  VKP39_RS06660 (VKP39_06660) - 1328203..1328559 (+) 357 WP_002988657.1 hypothetical protein -
  VKP39_RS06665 (VKP39_06665) brpA 1328670..1329953 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP39_RS06670 (VKP39_06670) - 1329962..1330486 (-) 525 WP_002988650.1 GNAT family N-acetyltransferase -
  VKP39_RS06675 (VKP39_06675) tsaE 1330461..1330922 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40241.47 Da        Isoelectric Point: 10.4168

>NTDB_id=840438 VKP39_RS06645 WP_002988663.1 1325953..1326987(-) (pptB) [Streptococcus pyogenes strain D641]
MKALFLKRRQNFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=840438 VKP39_RS06645 WP_002988663.1 1325953..1326987(-) (pptB) [Streptococcus pyogenes strain D641]
ATGAAAGCATTATTTCTGAAACGCCGTCAAAACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427