Detailed information NTG0840084

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: VKP56_RS00340
• Genome accession: NZ_CP142350
• Coordinates: 54495..55493 (+)
• Length: 332 a.a.
• NCBI ID: WP_011054100.1
• Uniprot ID: P0DF51
• Organism: Streptococcus pyogenes strain SS1445
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 49495..60493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VKP56_RS00320 (VKP56_00320)	-	50287..51768 (+)	1482	WP_009880316.1	PIN-like domain-containing protein	-
VKP56_RS00325 (VKP56_00325)	purB	51941..53233 (+)	1293	WP_115353931.1	adenylosuccinate lyase	-
VKP56_RS00330 (VKP56_00330)	comR	53364..54275 (+)	912	WP_011888526.1	helix-turn-helix domain-containing protein	Regulator
VKP56_RS00335 (VKP56_00335)	comS	54366..54464 (+)	99	WP_020833188.1	quorum-sensing system DWW-type pheromone	Regulator
VKP56_RS00340 (VKP56_00340)	ruvB	54495..55493 (+)	999	WP_011054100.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
VKP56_RS00345 (VKP56_00345)	-	55631..56068 (+)	438	WP_002994668.1	low molecular weight protein-tyrosine-phosphatase	-
VKP56_RS00350 (VKP56_00350)	-	56091..56492 (+)	402	WP_002986671.1	MORN repeat-containing protein	-
VKP56_RS00355 (VKP56_00355)	-	56489..58264 (+)	1776	WP_115353932.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37566.10 Da
• Isoelectric Point: 5.1632

>NTDB_id=840084 VKP56_RS00340 WP_011054100.1 54495..55493(+) (ruvB) [Streptococcus pyogenes strain SS1445]
MARILDNDVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIIT
AQITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEPYLIQKGFLMRTRTGRVATQK
AYRHLGYPYQNT

Nucleotide

• Length: 999 bp

>NTDB_id=840084 VKP56_RS00340 WP_011054100.1 54495..55493(+) (ruvB) [Streptococcus pyogenes strain SS1445]
ATGGCTAGAATTTTAGACAATGATGTAATGGGAAATGAGGAGTTTTCGGATCGGACTCTTCGCCCTCAATATCTACACGA
ATATATTGGACAAGATAAAGTTAAGGAACAATTCGCTATTTTTATAGAAGCAGCTAAAAGACGTGACGAATCTTTAGACC
ATGTTTTATTATTTGGACCTCCAGGACTGGGAAAAACAACAATGGCATTTGTGATTGCCAATGAATTGGGAGTTAATTTA
AAGCAAACTTCAGGTCCTGCCGTTGAGAAAGCTGGAGATTTGGTAGCTATTTTAAATGAATTAGAACCAGGGGATATTTT
GTTTATTGATGAAATTCACCGCATGCCAATGTCTGTCGAGGAAGTACTATATAGTGCTATGGAAGACTTCTATATTGATA
TTATGATTGGCGCTGGAGATACTAGTCGTAGTATTCATTTGGATCTGCCTCCATTTACATTGATTGGTGCTACTACACGT
GCAGGCATGTTATCTAATCCCCTCAGAGCTCGTTTTGGTATCACTGGTCACATGGAATACTATCAAGAAAAGGATTTGAC
AGAGATTGTGGAGCGTACAGCTACTATTTTTGAAATAAAAATAGACCATGAAGCTGCACGGAAATTAGCTTGTCGCAGTA
GAGGAACGCCCCGCATTGCTAATCGATTACTAAAACGAGTGCGTGATTATGCTCAAATTATTGGTGATGGCATCATAACG
GCTCAAATAACTGATAGAGCTTTGACTATGTTAGATGTTGACCGCGAAGGTCTCGATTACATTGATCAGAAAATTTTACG
AACGATGATTGAGATGTATCAGGGAGGGCCAGTTGGTTTGGGGACATTATCTGTGAATATTGCCGAGGAGCGTAATACAG
TTGAAGAGATGTATGAACCCTACTTAATTCAAAAAGGCTTTCTCATGCGAACACGAACAGGTCGTGTAGCGACGCAAAAG
GCTTATCGTCATCTTGGCTATCCCTATCAAAACACTTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: P0DF51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	84.848	99.398	0.843
ruvB	Streptococcus pneumoniae D39	84.848	99.398	0.843
ruvB	Streptococcus pneumoniae TIGR4	84.545	99.398	0.84
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.824	97.289	0.572
ruvB	Helicobacter pylori 26695	48.936	99.096	0.485
ruvB	Synechocystis sp. PCC 6803	50.16	94.277	0.473