Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QPX65_RS15400 Genome accession   NZ_CP126698
Coordinates   3215326..3216429 (-) Length   367 a.a.
NCBI ID   WP_061059019.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3210326..3221429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS15370 (QPX65_15370) hemF 3210880..3211797 (-) 918 WP_039555003.1 oxygen-dependent coproporphyrinogen oxidase -
  QPX65_RS15375 (QPX65_15375) - 3211826..3212383 (-) 558 WP_285455055.1 L-threonylcarbamoyladenylate synthase -
  QPX65_RS15380 (QPX65_15380) purE 3212564..3213049 (+) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QPX65_RS15385 (QPX65_15385) - 3213053..3214186 (+) 1134 WP_103185549.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QPX65_RS15390 (QPX65_15390) - 3214251..3214820 (-) 570 WP_085761423.1 type I DNA topoisomerase -
  QPX65_RS15395 (QPX65_15395) - 3214844..3215323 (-) 480 WP_011079084.1 DUF494 family protein -
  QPX65_RS15400 (QPX65_15400) dprA 3215326..3216429 (-) 1104 WP_061059019.1 DNA-processing protein DprA Machinery gene
  QPX65_RS15405 (QPX65_15405) - 3216429..3217526 (-) 1098 WP_011079082.1 LysM peptidoglycan-binding domain-containing protein -
  QPX65_RS15410 (QPX65_15410) def 3217665..3218177 (+) 513 WP_011079081.1 peptide deformylase -
  QPX65_RS15415 (QPX65_15415) fmt 3218209..3219156 (+) 948 WP_060532896.1 methionyl-tRNA formyltransferase -
  QPX65_RS15420 (QPX65_15420) rsmB 3219240..3220520 (+) 1281 WP_224642057.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39490.99 Da        Isoelectric Point: 6.9045

>NTDB_id=839667 QPX65_RS15400 WP_061059019.1 3215326..3216429(-) (dprA) [Vibrio vulnificus strain VV2018]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAARIGQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=839667 QPX65_RS15400 WP_061059019.1 3215326..3216429(-) (dprA) [Vibrio vulnificus strain VV2018]
ATGAGTCAAGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTACTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTCTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCTATATCCGCCGCTGCTTAAGGAAACAGCTTCACCGCCTTGCCAACTGTTTGTTCAGGGTGATCC
TCATTGTTTAACCAAGCCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAGCATGCCCGCGATT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACAGCGGGAGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAACATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGCGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACGAAAGCCAAAGCCGAACACTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTAGTGGTCGAAGCGGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAATGCACGCGGCGGAAA
CTTGCTGATAAAAAGCGGAGCGTGTTTGGTCACAGGGGTTGAAGATGTGCTGAGTGAAGTGCAAACCTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTCTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.697

98.91

0.689
  dprA Vibrio cholerae strain A1552

58.491

100

0.591
  dprA Glaesserella parasuis strain SC1401

45.013

100

0.455
  dprA Legionella pneumophila strain ERS1305867

44.321

98.365

0.436
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.783

100

0.409
  dprA Neisseria meningitidis strain C311

37.783

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.398
  dprA Acinetobacter baylyi ADP1

38.235

100

0.39
  dprA Acinetobacter baumannii D1279779

41.39

90.191

0.373
  dprA Acinetobacter baumannii strain A118

40.785

90.191

0.368