Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   DGAOKPDK_RS00595 Genome accession   NZ_CP142019
Coordinates   125631..126146 (-) Length   171 a.a.
NCBI ID   WP_000477154.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120631..131146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS00570 (VOI31_RS00570) - 121178..122821 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  DGAOKPDK_RS00575 (VOI31_RS00575) - 122814..123299 (+) 486 WP_000935250.1 DUF934 domain-containing protein -
  DGAOKPDK_RS00580 (VOI31_RS00580) - 123381..123734 (+) 354 WP_000457781.1 DMT family transporter -
  DGAOKPDK_RS00585 (VOI31_RS00585) - 123777..124220 (-) 444 WP_001176580.1 VOC family protein -
  DGAOKPDK_RS00590 (VOI31_RS00590) - 124347..125522 (-) 1176 WP_000129968.1 thiolase family protein -
  DGAOKPDK_RS00595 (VOI31_RS00595) fimT 125631..126146 (-) 516 WP_000477154.1 GspH/FimT family pseudopilin Machinery gene
  DGAOKPDK_RS00600 (VOI31_RS00600) omp38 126528..127559 (+) 1032 WP_057693493.1 outer membrane protein Omp38 -
  DGAOKPDK_RS00605 (VOI31_RS00605) - 127683..127841 (-) 159 WP_000692859.1 hypothetical protein -
  DGAOKPDK_RS00610 (VOI31_RS00610) - 127845..129050 (-) 1206 WP_324641991.1 RtcB family protein -
  DGAOKPDK_RS00615 (VOI31_RS00615) - 129327..130787 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19591.84 Da        Isoelectric Point: 9.1498

>NTDB_id=839244 DGAOKPDK_RS00595 WP_000477154.1 125631..126146(-) (fimT) [Acinetobacter baumannii strain EMB-1]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSNQLVCNTNWD
NRVISFVDNNRNVQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=839244 DGAOKPDK_RS00595 WP_000477154.1 125631..126146(-) (fimT) [Acinetobacter baumannii strain EMB-1]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTAATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATGTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421