Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QPR36_RS07985 Genome accession   NZ_CP126577
Coordinates   1603611..1604510 (+) Length   299 a.a.
NCBI ID   WP_003154279.1    Uniprot ID   -
Organism   Bacillus velezensis strain 411     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1598611..1609510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR36_RS07965 (QPR36_07965) - 1599302..1601005 (+) 1704 WP_302242728.1 glycosyl transferase -
  QPR36_RS07970 (QPR36_07970) - 1601002..1601283 (+) 282 WP_302242730.1 FlhB-like flagellar biosynthesis protein -
  QPR36_RS07975 (QPR36_07975) sucC 1601458..1602615 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  QPR36_RS07980 (QPR36_07980) sucD 1602644..1603546 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  QPR36_RS07985 (QPR36_07985) dprA 1603611..1604510 (+) 900 WP_003154279.1 DNA-processing protein DprA Machinery gene
  QPR36_RS07990 (QPR36_07990) topA 1604692..1606767 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  QPR36_RS07995 (QPR36_07995) trmFO 1606832..1608139 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPR36_RS08000 (QPR36_08000) xerC 1608209..1609126 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32844.89 Da        Isoelectric Point: 7.8285

>NTDB_id=838867 QPR36_RS07985 WP_003154279.1 1603611..1604510(+) (dprA) [Bacillus velezensis strain 411]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=838867 QPR36_RS07985 WP_003154279.1 1603611..1604510(+) (dprA) [Bacillus velezensis strain 411]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAGGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCTATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATTAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.502

93.311

0.378