Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QPL77_RS11220 Genome accession   NZ_CP126521
Coordinates   2237896..2238231 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2232896..2243231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS11200 (QPL77_11200) gcvT 2233373..2234470 (-) 1098 WP_211064173.1 glycine cleavage system aminomethyltransferase GcvT -
  QPL77_RS11205 (QPL77_11205) - 2235033..2236703 (+) 1671 WP_211064172.1 SNF2-related protein -
  QPL77_RS11210 (QPL77_11210) - 2236718..2237515 (+) 798 WP_012010554.1 YqhG family protein -
  QPL77_RS11215 (QPL77_11215) - 2237698..2237862 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  QPL77_RS11220 (QPL77_11220) sinR 2237896..2238231 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  QPL77_RS11225 (QPL77_11225) - 2238299..2239099 (-) 801 WP_144462730.1 TasA family protein -
  QPL77_RS11230 (QPL77_11230) - 2239157..2239729 (-) 573 WP_211064171.1 signal peptidase I -
  QPL77_RS11235 (QPL77_11235) tapA 2239781..2240305 (-) 525 WP_211064170.1 amyloid fiber anchoring/assembly protein TapA -
  QPL77_RS11240 (QPL77_11240) - 2240605..2240883 (+) 279 WP_249407469.1 DUF3889 domain-containing protein -
  QPL77_RS11245 (QPL77_11245) - 2240917..2241111 (-) 195 WP_012010560.1 YqzE family protein -
  QPL77_RS11250 (QPL77_11250) comGG 2241171..2241554 (-) 384 WP_144522046.1 competence type IV pilus minor pilin ComGG -
  QPL77_RS11255 (QPL77_11255) comGF 2241551..2242081 (-) 531 WP_249407460.1 competence type IV pilus minor pilin ComGF -
  QPL77_RS11260 (QPL77_11260) comGE 2241990..2242307 (-) 318 WP_144522050.1 competence type IV pilus minor pilin ComGE -
  QPL77_RS11265 (QPL77_11265) comGD 2242291..2242737 (-) 447 WP_144522052.1 competence type IV pilus minor pilin ComGD -
  QPL77_RS11270 (QPL77_11270) comGC 2242730..2243023 (-) 294 WP_144522054.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=838320 QPL77_RS11220 WP_012010555.1 2237896..2238231(+) (sinR) [Bacillus pumilus strain Monterrey_S2]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=838320 QPL77_RS11220 WP_012010555.1 2237896..2238231(+) (sinR) [Bacillus pumilus strain Monterrey_S2]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946