Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QN289_RS05940 Genome accession   NZ_CP126312
Coordinates   1118435..1119301 (-) Length   288 a.a.
NCBI ID   WP_064777129.1    Uniprot ID   A0A1B2A7H5
Organism   Latilactobacillus curvatus strain KFRI-K200347     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1113435..1124301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN289_RS05925 (QN289_05925) topA 1114691..1116775 (-) 2085 WP_039099413.1 type I DNA topoisomerase -
  QN289_RS05930 (QN289_05930) - 1117010..1117453 (-) 444 WP_004270319.1 Rrf2 family transcriptional regulator -
  QN289_RS05935 (QN289_05935) - 1117486..1118340 (-) 855 WP_039099414.1 SDR family oxidoreductase -
  QN289_RS05940 (QN289_05940) dprA 1118435..1119301 (-) 867 WP_064777129.1 DNA-processing protein DprA Machinery gene
  QN289_RS05945 (QN289_05945) - 1119352..1120113 (-) 762 WP_039099416.1 ribonuclease HII -
  QN289_RS05950 (QN289_05950) ylqF 1120113..1120964 (-) 852 WP_162145192.1 ribosome biogenesis GTPase YlqF -
  QN289_RS05955 (QN289_05955) lepB 1121208..1121762 (-) 555 WP_069468225.1 signal peptidase I -
  QN289_RS05960 (QN289_05960) - 1121762..1121986 (-) 225 WP_004270292.1 YozE family protein -
  QN289_RS05965 (QN289_05965) - 1121996..1122628 (-) 633 WP_039099418.1 YpmS family protein -
  QN289_RS05970 (QN289_05970) - 1122643..1123548 (-) 906 WP_064777126.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31704.66 Da        Isoelectric Point: 7.7227

>NTDB_id=837533 QN289_RS05940 WP_064777129.1 1118435..1119301(-) (dprA) [Latilactobacillus curvatus strain KFRI-K200347]
MLTKKQLLLKVHLADGFGPISELRLAAWLVTSHNWALSALEIAQIACLPERYWLTFQTSFDSLALQQKCATHERYVQYLT
ILEADYPQRLLETHCPPTVLFYRGDLSVLKQPCVAVVGARQATEYTKQALQHLLGLPQTTTIISGLAQGADAMAHEVALQ
KGLRPIGVIGTGLNCYYPPQNEHLQQAVAEKGLLISEYGLDVTAKKHHFPARNRIIAGLCHSLVVTEARQKSGSLITANL
ALQANRNVYALPGQVNHSLSAGCNQLILAGATPLLNQQLLLDELHYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=837533 QN289_RS05940 WP_064777129.1 1118435..1119301(-) (dprA) [Latilactobacillus curvatus strain KFRI-K200347]
GTGTTGACTAAAAAGCAATTATTATTGAAAGTACACCTGGCAGATGGGTTTGGCCCCATCAGTGAATTACGCTTAGCCGC
ATGGTTAGTAACGAGTCACAATTGGGCGTTATCGGCACTGGAGATTGCGCAGATTGCGTGTTTACCGGAGCGATATTGGC
TGACCTTTCAGACTAGTTTTGACAGTCTAGCTCTGCAACAGAAGTGTGCCACGCATGAACGTTATGTTCAGTATCTGACG
ATTCTAGAAGCAGATTATCCGCAACGGTTGTTAGAAACCCATTGTCCGCCAACAGTTTTATTTTATCGCGGCGATTTAAG
TGTTTTGAAACAGCCATGTGTTGCGGTGGTTGGTGCGCGGCAAGCCACGGAGTATACTAAGCAAGCCCTGCAGCATTTAT
TGGGATTACCACAAACAACGACGATTATCAGTGGTTTAGCTCAAGGGGCGGATGCGATGGCGCATGAAGTTGCACTCCAA
AAAGGGTTACGACCGATTGGCGTGATTGGAACGGGCTTGAATTGTTATTACCCACCACAAAACGAACACTTGCAACAGGC
GGTCGCTGAAAAAGGGTTATTGATATCAGAATACGGTTTGGACGTAACGGCTAAGAAGCACCACTTCCCAGCCCGAAATC
GGATTATTGCCGGACTTTGTCATAGTTTAGTGGTCACAGAAGCCCGCCAAAAAAGTGGTAGCTTAATCACCGCTAATTTA
GCATTACAAGCCAATCGTAACGTATATGCCTTACCGGGCCAGGTTAATCATTCATTATCGGCAGGCTGTAATCAACTGAT
TTTAGCCGGTGCAACGCCGCTTTTAAATCAACAATTGTTATTGGACGAGTTGCATTATTTTGATTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

76.389

100

0.764
  dprA Legionella pneumophila strain ERS1305867

36.177

100

0.368