Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VLS60_RS06455 Genome accession   NZ_CP141749
Coordinates   1197653..1198390 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2023CK-01482     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192653..1203390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLS60_RS06425 (VLS60_06425) yfiL 1192811..1193176 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  VLS60_RS06430 (VLS60_06430) aroF 1193386..1194456 (+) 1071 WP_072649798.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VLS60_RS06435 (VLS60_06435) tyrA 1194467..1195588 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VLS60_RS06440 (VLS60_06440) pheA 1195631..1196791 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  VLS60_RS06445 (VLS60_06445) pheL 1196890..1196937 (-) 48 WP_010723158.1 phe operon leader peptide -
  VLS60_RS06450 (VLS60_06450) raiA 1197041..1197382 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VLS60_RS06455 (VLS60_06455) comL 1197653..1198390 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VLS60_RS06460 (VLS60_06460) rluD 1198525..1199505 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VLS60_RS06465 (VLS60_06465) yfiH 1199502..1200233 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  VLS60_RS06470 (VLS60_06470) clpC 1200363..1202936 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=837356 VLS60_RS06455 WP_000197686.1 1197653..1198390(-) (comL) [Escherichia coli strain 2023CK-01482]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=837356 VLS60_RS06455 WP_000197686.1 1197653..1198390(-) (comL) [Escherichia coli strain 2023CK-01482]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376