Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH20_RS18410 Genome accession   NZ_CP126110
Coordinates   3812052..3812480 (-) Length   142 a.a.
NCBI ID   WP_283919431.1    Uniprot ID   A0AA95MEU5
Organism   Neobacillus sp. WH10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3807052..3817480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS18360 (QNH20_18360) - 3807825..3808259 (-) 435 WP_283919421.1 terminase small subunit -
  QNH20_RS18365 (QNH20_18365) - 3808297..3809166 (-) 870 WP_283919422.1 hypothetical protein -
  QNH20_RS18370 (QNH20_18370) - 3809774..3810085 (-) 312 WP_283919423.1 hypothetical protein -
  QNH20_RS18375 (QNH20_18375) - 3810130..3810549 (-) 420 WP_283919424.1 ArpU family phage packaging/lysis transcriptional regulator -
  QNH20_RS18380 (QNH20_18380) - 3810557..3810895 (-) 339 WP_283919425.1 hypothetical protein -
  QNH20_RS18385 (QNH20_18385) - 3810896..3811069 (-) 174 WP_283919426.1 hypothetical protein -
  QNH20_RS18390 (QNH20_18390) - 3811066..3811353 (-) 288 WP_283919427.1 hypothetical protein -
  QNH20_RS18395 (QNH20_18395) - 3811340..3811486 (-) 147 WP_283919428.1 hypothetical protein -
  QNH20_RS18400 (QNH20_18400) - 3811479..3811811 (-) 333 WP_283919429.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  QNH20_RS18405 (QNH20_18405) - 3811808..3812071 (-) 264 WP_283919430.1 hypothetical protein -
  QNH20_RS18410 (QNH20_18410) ssbA 3812052..3812480 (-) 429 WP_283919431.1 single-stranded DNA-binding protein Machinery gene
  QNH20_RS18415 (QNH20_18415) - 3812631..3812948 (-) 318 WP_283919432.1 hypothetical protein -
  QNH20_RS18420 (QNH20_18420) - 3812960..3813592 (-) 633 WP_283919433.1 DNA cytosine methyltransferase -
  QNH20_RS18425 (QNH20_18425) - 3813644..3813823 (-) 180 WP_283919434.1 hypothetical protein -
  QNH20_RS18430 (QNH20_18430) - 3814134..3814499 (-) 366 WP_283919435.1 hypothetical protein -
  QNH20_RS18435 (QNH20_18435) - 3814657..3814926 (-) 270 WP_283919436.1 DUF3310 domain-containing protein -
  QNH20_RS18440 (QNH20_18440) - 3815120..3816412 (-) 1293 WP_283919437.1 replicative DNA helicase -
  QNH20_RS18445 (QNH20_18445) - 3816405..3816659 (-) 255 WP_283919438.1 replicative helicase loader/inhibitor -
  QNH20_RS18450 (QNH20_18450) - 3816652..3817308 (-) 657 WP_283919439.1 DnaD domain protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15634.64 Da        Isoelectric Point: 7.9472

>NTDB_id=836447 QNH20_RS18410 WP_283919431.1 3812052..3812480(-) (ssbA) [Neobacillus sp. WH10]
MLNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSKEKESDFINCVVWKKAAENVANFLKKGSLAGVDGRIQTRNYE
GQDGKKIYVTEVVAESVQFLEPKKDGNKQPDNGGLYAPTSSTKIDNDPFQNGVGISDDNLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=836447 QNH20_RS18410 WP_283919431.1 3812052..3812480(-) (ssbA) [Neobacillus sp. WH10]
ATGTTAAATAGAGTCGTATTAGTAGGAAGATTAACCAAGGATCCTGATTTACGCTATACACCAAATGGAGTGCCTGTAGC
TACCTTCACACTAGCAGTTAACCGTCCATTCAGCAAAGAAAAGGAATCCGATTTTATCAACTGTGTCGTATGGAAAAAAG
CAGCCGAGAACGTCGCGAACTTCCTAAAGAAAGGGTCGCTTGCTGGAGTGGACGGAAGGATTCAAACACGCAACTATGAA
GGACAGGATGGTAAGAAAATTTATGTGACTGAGGTAGTAGCGGAATCGGTACAGTTTTTAGAACCGAAGAAAGATGGCAA
TAAGCAACCGGATAATGGTGGACTATATGCTCCTACTAGCAGCACAAAAATTGATAACGATCCATTTCAAAACGGAGTAG
GTATCTCAGATGACAATCTTCCATTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.69
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

74.648

0.451
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

82.394

0.366